Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000008 (thrA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000008 showshow history
Names
thrA thrA1 thrA2 JW0001 ECK0002 thrD Hs b0002
Product
bifunctional aspartokinase I/homoserine dehydrogenase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 337 2799 2463 821
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000001
EnteroFam0000008: Trusted threshold=2308.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR002912 (IPR002912 ACT domain) Apr 2008
Automated Process Approved IPR005106 (IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding) Apr 2008
Automated Process Approved IPR001342 (IPR001342 Homoserine dehydrogenase, catalytic) Apr 2008
Automated Process Approved IPR011147 (IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I) Apr 2008
Automated Process Approved IPR001341 (IPR001341 Aspartate kinase) Apr 2008
Automated Process Approved IPR027795 (IPR027795 CASTOR, ACT domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF01842 (PF01842 ACT domain) Jul 2018
Automated Process Approved PF03447 (PF03447 Homoserine dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF13840 (PF13840 ACT domain) Jul 2018
Automated Process Approved PF00742 (PF00742 Homoserine dehydrogenase) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009067 aspartate family amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106, IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009088 threonine biosynthetic process Experimental - PubMed ID: 179564 Feb 2006
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009090 homoserine biosynthetic process Experimental - PubMed ID: 179564 Feb 2006
Person Approved GO biological process GO:0009086 methionine biosynthetic process Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO biological process GO:0051289 protein homotetramerization Experimental - PubMed ID: 4562989
Reference: Escherichia coli K-12 Tir8 		Nov 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004412 homoserine dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0003959 NADPH dehydrogenase activity Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO molecular function GO:0005524 ATP binding Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO molecular function GO:0004072 aspartate kinase activity Experimental - PubMed ID: 4562990
Reference: Escherichia coli 		Feb 2006
Person Approved GO molecular function GO:0004412 homoserine dehydrogenase activity Experimental - PubMed ID: 4562990 Feb 2006
Person Approved GO molecular function GO:0000287 magnesium ion binding Published Annotation - PubMed ID: 6150934 Feb 2006
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thrA Published Sequence Analysis - PubMed ID: 7003595 Feb 2006
Person Approved synonym thrD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym Hs Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0002 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0001 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym thrA2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym thrA1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0002 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional aspartokinase I/homoserine dehydrogenase I Experimental - PubMed ID: 4562990
Reference: Escherichia coli K-12 		Apr 2007
Person Approved alternate product name bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000008: Trusted threshold=2308.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000001
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03447 Homoserine dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF03447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I Protein Sequence Similarity - InterPro Domain: IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027795 CASTOR, ACT domain Protein Sequence Similarity - InterPro Domain: IPR027795
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00742 Homoserine dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001341 Aspartate kinase Protein Sequence Similarity - InterPro Domain: IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding Protein Sequence Similarity - InterPro Domain: IPR005106
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001342 Homoserine dehydrogenase, catalytic Protein Sequence Similarity - InterPro Domain: IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13840 ACT domain Protein Sequence Similarity - PFAM Model Name: PF13840
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01842 ACT domain Protein Sequence Similarity - PFAM Model Name: PF01842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.2.4 Experimental - PubMed ID: 4562990
Reference: Escherichia coli K-12 Tir 8 		Nov 2006
Person Approved EC number 1.1.1.3 Experimental - PubMed ID: 4562990
Reference: Escherichia coli K-12 Tir 8 		Nov 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved MultiFun 1.5.1.8 (metabolism; building block biosynthesis; amino acids; threonine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.5.1.9 (metabolism; building block biosynthesis; amino acids; methionine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.5.1.21 (metabolism; building block biosynthesis; amino acids; homoserine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10998 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000008 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00561 Published Annotation - Swiss-Prot Accession Number: P00561 Jan 2005
Automated Process Approved db xref GeneID:945803 Published Annotation - Entrez Gene Database ID: 945803
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00561 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.5.1.8 metabolism; building block biosynthesis; amino acids; threonine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.5.1.21 metabolism; building block biosynthesis; amino acids; homoserine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Threonine Experimental - PubMed ID: 179564 Feb 2006
Automated Process Approved function 7.1 location of gene products; cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal); GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009088 - threonine biosynthetic process; GO_process: GO:0009086 - methionine biosynthetic process; GO_process: GO:0009090 - homoserine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73113.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009067 aspartate family amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106, IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0051289 protein homotetramerization Experimental - PubMed ID: 4562989
Reference: Escherichia coli K-12 Tir8 		Nov 2006
Person Approved GO biological process GO:0009090 homoserine biosynthetic process Experimental - PubMed ID: 179564 Feb 2006
Person Approved GO biological process GO:0009086 methionine biosynthetic process Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO biological process GO:0009088 threonine biosynthetic process Experimental - PubMed ID: 179564 Feb 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO molecular function GO:0000287 magnesium ion binding Published Annotation - PubMed ID: 6150934 Feb 2006
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0003959 NADPH dehydrogenase activity Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO molecular function GO:0005524 ATP binding Published Annotation - PubMed ID: 6150934 Feb 2006
Person Approved GO molecular function GO:0004072 aspartate kinase activity Experimental - PubMed ID: 4562990
Reference: Escherichia coli 		Feb 2006
Person Approved GO molecular function GO:0004412 homoserine dehydrogenase activity Experimental - PubMed ID: 4562990 Feb 2006
Automated Process Approved GO molecular function GO:0004412 homoserine dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000001 thrA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001658 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000130 thrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000191 thrA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001263 thrA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000237 thrA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003027 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003694 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129464 thrA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104909 thrA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104304 thrA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003726 thrA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003532 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000844 thrA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001258 thrA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005011 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015154 thrA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003696 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001049 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297963 thrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003157 thrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000738 thrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000858 thrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008603 thrA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000003 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006579 thrA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000002 thrA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004304 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009751 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008867 thrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007686 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076063 thrA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005093 thrA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000043 thrA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009236 thrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009543 thrA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000003 thrA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004452 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002935 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009241 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007754 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008258 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009061 thrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004843 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009193 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008562 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008759 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006114 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005729 thrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005390 thrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023911 thrA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008285 thrA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004684 thrA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000299 thrA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000074 thrA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000003 thrA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005163 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000348 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000163 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000004 thrA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000003 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000002 thrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129881 thrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001420 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000003 thrA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000207 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004325 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000003 thrA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003044 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005019 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003685 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004506 thrA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000002 thrA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004247 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000687 thrA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003622 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008373 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004117 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287647 thrA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003828 thrA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064208 thrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002251 thrA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001001 thrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002267 thrA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008878 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138051 thrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004184 thrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003142 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000003 thrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004282 thrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000003 thrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000004 thrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006833 thrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004372 thrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008097 thrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004336 thrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004818 thrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008428 thrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004376 thrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006058 thrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000003 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000003 thrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000004 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004679 thrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007375 thrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004097 thrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004239 thrA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105280 thrA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081713 thrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000003 thrA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090651 thrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004511 thrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008316 thrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004295 thrA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000084 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267043 thrA CDS
Person Approved Go view Shigella boydii 227 ADV-0000002 thrA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005398 thrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006894 thrA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000003 thrA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070924 thrA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086368 thrA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000002 thrA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000003 thrA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001815 thrA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002457 VC2364 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000120 thrA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001160 thrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000071 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001827 thrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000261 thrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003255 thrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001821 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243254 thrA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004913 thrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004830 thrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005878 thrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002861 thrA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116874 thrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005254 thrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007612 thrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004022 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005755 thrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007279 thrA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033499 thrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004664 thrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000422 thrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003796 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007788 thrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007491 thrA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000644 thrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000747 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004268 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002045 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000195 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23027mutantTn5 InsertionRequest the StrainABE-0000008thrAthrA::Tn5KAN-I-SceI at position 1729 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4636989 to 7799
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0014430creCCDSforward46366964638120Upstream
ABE-0014432creDCDSforward46381784639530Upstream
ABE-0014434arcACDScomplement46395904640306Upstream
ABE-0014437yjjYCDSforward46404024640542Upstream
ABE-0014442yjtDCDSforward46409424641628Upstream
ABE-0000001sourceforward14641652Contains
ABE-0000006thrLCDSforward190255Upstream
ABE-0000008thrACDSforward3372799Matches
ABE-0000010thrBCDSforward28013733Downstream
ABE-0000012thrCCDSforward37345020Downstream
ABE-0000015yaaXCDSforward52345530Downstream
ABE-0285320repeat_regionforward55655669Downstream
ABE-0000018yaaACDScomplement56836459Downstream
ABE-0000020yaaJCDScomplement65297959Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.