Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000012 (thrC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000012 showshow history
Names
thrC JW0003 ECK0004 b0004
Product
threonine synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3734 5020 1287 429
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000003
EnteroFam0000012: Trusted threshold=1190.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Apr 2008
Automated Process Approved IPR000634 (IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site) Apr 2008
Automated Process Approved IPR004450 (IPR004450 Threonine synthase-like) Apr 2008
Automated Process Approved IPR029144 (IPR029144 Threonine synthase, N-terminal) Jul 2018
Automated Process Approved IPR036052 (IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme) Jul 2018
Automated Process Approved PF14821 (PF14821 Threonine synthase N terminus) Jul 2018
Automated Process Approved PF00291 (PF00291 Pyridoxal-phosphate dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009088 threonine biosynthetic process Experimental - PubMed ID: 6316258 Feb 2006
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009088 threonine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004795 threonine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thrC Published Sequence Analysis - PubMed ID: 6316258 Feb 2006
Person Approved synonym JW0003 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0004 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0004 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product threonine synthase Experimental - PubMed ID: 6316258 Feb 2006
Person Approved alternate product name TS Published Annotation - PubMed ID: 6316258 Feb 2006
Protein Family
Person Approved EnteroFam EnteroFam0000012: Trusted threshold=1190.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000003
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR036052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00291 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF00291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR000634
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004450 Threonine synthase-like Protein Sequence Similarity - InterPro Domain: IPR004450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029144 Threonine synthase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR029144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14821 Threonine synthase N terminus Protein Sequence Similarity - PFAM Model Name: PF14821
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.3.1 Experimental - PubMed ID: 6316258 Feb 2006
Person Approved MultiFun 1.5.1.8 (metabolism; building block biosynthesis; amino acids; threonine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945198 Published Annotation - Entrez Gene Database ID: 945198
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00934 Published Annotation - Swiss-Prot Accession Number: P00934 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00934 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000012 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786185 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11000 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.1 location of gene products; cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Threonine Published Annotation - PubMed ID: 6316258 Feb 2006
Automated Process Approved function 1.5.1.8 metabolism; building block biosynthesis; amino acids; threonine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009088 - threonine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73115.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009088 threonine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009088 threonine biosynthetic process Experimental - PubMed ID: 6316258 Feb 2006
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004795 threonine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000003 thrC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001660 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000278 thrC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000333 thrC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001473 thrC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000382 thrC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003029 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003696 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129462 thrC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104907 thrC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104302 thrC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003724 thrC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003530 thrC CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000846 thrC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001260 thrC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005013 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015152 thrC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003694 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001051 thrC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297975 thrC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003155 thrC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000740 thrC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000856 thrC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008605 thrC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000005 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006577 thrC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000004 thrC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004302 thrC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009749 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008869 thrC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007688 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076065 thrC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005095 thrC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000045 thrC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009238 thrC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009545 thrC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000005 thrC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004454 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002937 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009243 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007756 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008260 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009059 thrC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004845 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009191 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008564 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008761 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006116 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008346 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005731 thrC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005392 thrC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023913 thrC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008283 thrC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004686 thrC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000301 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000076 thrC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000005 thrC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005161 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000346 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000161 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000006 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174203 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000005 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000004 thrC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129883 thrC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001422 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000005 thrC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000209 thrC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004323 thrC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000005 thrC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003046 thrC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005021 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003687 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004508 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000004 thrC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004245 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000689 thrC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003620 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008375 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004119 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287649 thrC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003830 thrC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064206 thrC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002263 thrC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000999 thrC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002265 thrC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008876 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138055 thrC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004186 thrC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003140 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000005 thrC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004284 thrC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000016 thrC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000016 thrC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006831 thrC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004374 thrC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008095 thrC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004338 thrC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004820 thrC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008430 thrC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004378 thrC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006056 thrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000005 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000005 thrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000006 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004681 thrC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007373 thrC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004099 thrC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004241 thrC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105287 thrC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081715 thrC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000005 thrC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090657 thrC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004509 thrC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008318 thrC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004297 thrC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000086 thrC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267041 thrC CDS
Person Approved Go view Shigella boydii 227 ADV-0000004 thrC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005400 thrC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006892 thrC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000005 thrC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070926 thrC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086370 thrC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000004 thrC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000005 thrC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001813 thrC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002455 VC2362 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001163 thrC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000073 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001839 thrC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000259 thrC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003253 thrC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001819 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243252 thrC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004911 thrC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004832 thrC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005880 thrC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002859 thrC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116883 thrC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005252 thrC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007614 thrC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004024 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005757 thrC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007277 thrC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033497 thrC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004662 thrC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000424 thrC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003794 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007790 thrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007489 thrC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000646 thrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000749 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004266 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002061 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000193 thrC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23638mutantTn5 InsertionRequest the StrainABE-0000012thrCthrC::Tn5KAN-I-SceI at position 472 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4640386 to 10020
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0014437yjjYCDSforward46404024640542Upstream
ABE-0014442yjtDCDSforward46409424641628Upstream
ABE-0000001sourceforward14641652Contains
ABE-0000006thrLCDSforward190255Upstream
ABE-0000008thrACDSforward3372799Upstream
ABE-0000010thrBCDSforward28013733Upstream
ABE-0000012thrCCDSforward37345020Matches
ABE-0000015yaaXCDSforward52345530Downstream
ABE-0285320repeat_regionforward55655669Downstream
ABE-0000018yaaACDScomplement56836459Downstream
ABE-0000020yaaJCDScomplement65297959Downstream
ABE-0000027talBCDSforward82389191Downstream
ABE-0000030mogCDSforward93069893Downstream
ABE-0000032satPCDScomplement992810494Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.