Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000020 (yaaJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000020 showshow history
Names
yaaJ JW0006 ECK0007 b0007
Product
putative transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 6529 7959 1431 477
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001463 (IPR001463 Sodium:alanine symporter) Apr 2008
Automated Process Approved PF01235 (PF01235 Sodium:alanine symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0032328 alanine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001463
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015655 alanine:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001463
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005283 amino acid:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yaaJ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0006 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0007 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0007 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name putative alanine/glycine transport protein (AGCS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name inner membrane transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF01235 Sodium:alanine symporter family Protein Sequence Similarity - PFAM Model Name: PF01235
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001463 Sodium:alanine symporter Protein Sequence Similarity - InterPro Domain: IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.131 (transport; substrate; Na+/ alanine/glycine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.25 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Alanine/Glycine:Cation symporter (AGCS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000020 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11555 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30143 Published Annotation - Swiss-Prot Accession Number: P30143 Jan 2005
Automated Process Approved db xref GeneID:944745 Published Annotation - Entrez Gene Database ID: 944745
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786188 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note inner membrane transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73118.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0032328 alanine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001463
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015655 alanine:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001463
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005283 amino acid:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006599 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002634 yaaJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002544 yaaJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002215 yaaJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002415 yaaJ CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003528 yaaJ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000848 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001054 yaaJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000853 agcS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008608 agcS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000009 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006573 agcS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000007 yaaJ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004299 yaaJ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009745 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008873 agcS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007693 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076071 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005098 agcS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000049 agcS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009242 agcS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009549 agcS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000008 yaaJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004458 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002940 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009246 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007759 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008263 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009056 agcS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004848 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009188 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008567 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008764 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006119 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008349 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005734 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005395 agcS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023916 yaaJ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008279 alsT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004689 agcS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000079 yaaJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000008 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000362 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000343 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000158 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000011 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174206 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000008 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000007 agcS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129886 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001425 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000009 yaaJ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000211 yaaJ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000008 yaaJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003049 yaaJ CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143254 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005585 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004188 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003138 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000007 yaaJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004286 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000022 yaaJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000022 yaaJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006829 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004376 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008093 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004340 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004822 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008432 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004380 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006054 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000007 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000009 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004683 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007371 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004101 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004243 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105291 yaaJ CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081717 yaaJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000007 yaaJ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090662 yaaJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004507 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008320 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004299 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000088 yaaJ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267177 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005403 agcS CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000008 yaaJ CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0070930 yaaJ pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0086373 yaaJ pseudogene
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001811 yaaJ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002449 VC2356 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004823 yaaJ CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002070 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000190 yaaJ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1529 to 12959
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000008thrACDSforward3372799Downstream
ABE-0000010thrBCDSforward28013733Downstream
ABE-0000012thrCCDSforward37345020Downstream
ABE-0000015yaaXCDSforward52345530Downstream
ABE-0285320repeat_regionforward55655669Downstream
ABE-0000018yaaACDScomplement56836459Downstream
ABE-0000020yaaJCDScomplement65297959Matches
ABE-0000027talBCDSforward82389191Upstream
ABE-0000030mogCDSforward93069893Upstream
ABE-0000032satPCDScomplement992810494Upstream
ABE-0000037yaaWCDScomplement1064311356Upstream
ABE-0000043yaaICDScomplement1138211786Upstream
ABE-0000052dnaKCDSforward1216314079Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.