Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000027 (talB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000027 showshow history
Names
talB yaaK JW0007 ECK0008 b0008
Product
transaldolase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 8238 9191 954 318
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004730 (IPR004730 Transaldolase type 1) Apr 2008
Automated Process Approved IPR001585 (IPR001585 Transaldolase/Fructose-6-phosphate aldolase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF00923 (PF00923 Transaldolase/Fructose-6-phosphate aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004801 transaldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name talB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0007 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0008 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaaK Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0008 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product transaldolase B Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name transaldolase B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF00923 Transaldolase/Fructose-6-phosphate aldolase Protein Sequence Similarity - PFAM Model Name: PF00923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004730 Transaldolase type 1 Protein Sequence Similarity - InterPro Domain: IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001585 Transaldolase/Fructose-6-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.2.1.2 Published Annotation - Swiss-Prot Accession Number: P0A870 Feb 2006
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.7.3 (metabolism; central intermediary metabolism; pentose phosphate shunt, non-oxidative branch) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786189 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000027 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11556 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A870 Published Annotation - Swiss-Prot Accession Number: P0A870 Jan 2006
Automated Process Approved db xref GeneID:944748 Published Annotation - Entrez Gene Database ID: 944748
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A870 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.1 location of gene products; cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved function 1.7.3 metabolism; central intermediary metabolism; pentose phosphate shunt, non-oxidative branch Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73119.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004801 transaldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004730
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001662 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000862 talB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000722 talB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000535 talB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000865 talB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003031 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003705 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003720 talB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003527 talB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000849 talB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001263 talB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005015 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015147 talB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003691 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001055 talB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297981 talB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003153 talB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000742 talB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000851 tal2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008609 tal2 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000010 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006572 tal CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000008 talB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004298 talB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009744 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008874 tal2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007694 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076072 talB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005099 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000050 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009243 tal2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009550 tal2 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000009 talB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004459 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002941 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009247 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007760 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008264 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009055 tal2 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004849 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009187 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008568 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008765 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006120 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008350 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005735 tal2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005396 tal2 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023917 talB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008278 talB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004690 tal2 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000307 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000080 talB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000009 talB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000361 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000342 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000157 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000012 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174207 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000009 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000008 tal2 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129887 talB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001426 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000010 talB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000212 talB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004320 talB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000009 talB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003050 talB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005023 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003689 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004510 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000006 talB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004243 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000691 talB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003618 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008377 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004121 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287651 talB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003833 talB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064204 talB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002264 talB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000998 talB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002262 talB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008874 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002159 tal CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004189 tal2 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003137 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000008 talB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004287 tal2 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000028 talB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000028 talB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006828 tal2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004377 tal2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008092 tal2 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004341 tal2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004823 tal2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008433 tal2 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004381 tal2 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006053 tal2 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000009 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000008 talB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000010 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004684 tal2 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007370 tal2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004102 tal2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004244 tal2 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105294 talB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081718 talB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000008 talB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090666 talB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004506 tal2 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008321 tal2 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004300 tal2 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000089 talB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267182 tal CDS
Person Approved Go view Shigella boydii 227 ADV-0000011 talB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005404 tal2 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006887 tal2 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000009 talB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070931 talB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086374 talB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000008 talB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000011 talB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001810 talB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003513 VCA0623 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001178 talB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000075 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001844 talB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000257 talB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003251 talB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001817 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243249 talB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004908 tal CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004835 talB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005883 tal CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002857 talB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116888 talB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005249 tal CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007617 tal CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004026 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005759 tal CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007274 tal CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033494 talB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004660 tal CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000426 talB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003791 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007793 tal CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007487 tal CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000648 talB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000751 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004263 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002074 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000189 talB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23028mutantTn5 InsertionRequest the StrainABE-0000027talBtalB::Tn5KAN-I-SceI at position 322 in Plus orientation ,+ pKD460Blattner Laboratory
FB23317mutantTn5 InsertionRequest the StrainABE-0000027talBtalB::Tn5KAN-I-SceI at position 322 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3238 to 14191
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000010thrBCDSforward28013733Upstream
ABE-0000012thrCCDSforward37345020Upstream
ABE-0000015yaaXCDSforward52345530Upstream
ABE-0285320repeat_regionforward55655669Upstream
ABE-0000018yaaACDScomplement56836459Upstream
ABE-0000020yaaJCDScomplement65297959Upstream
ABE-0000027talBCDSforward82389191Matches
ABE-0000030mogCDSforward93069893Downstream
ABE-0000032satPCDScomplement992810494Downstream
ABE-0000037yaaWCDScomplement1064311356Downstream
ABE-0000043yaaICDScomplement1138211786Downstream
ABE-0000052dnaKCDSforward1216314079Downstream
ABE-0000054dnaJCDSforward1416815298Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.