Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000068 (nhaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000068 showshow history
Names
nhaA antA JW0018 ECK0020 ant b0019
Product
sodium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 17489 18655 1167 389
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000008
EnteroFam0000068: Trusted threshold=875.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004670 (IPR004670 Na+/H+ antiporter NhaA) Apr 2008
Automated Process Approved PF06965 (PF06965 Na+/H+ antiporter 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009268 response to pH Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nhaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ant Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym antA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0018 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0020 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0019 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sodium:proton antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name sodium:proton antiporter (NhaA family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name Na+/H antiporter, pH dependent Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000068: Trusted threshold=875.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000008
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF06965 Na+/H+ antiporter 1 Protein Sequence Similarity - PFAM Model Name: PF06965
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004670 Na+/H+ antiporter NhaA Protein Sequence Similarity - InterPro Domain: IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.4 (cell processes; adaptation to stress; pH response) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.136 (transport; substrate; Na+/H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.33 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The NhaA Na+:H+ Antiporter (NhaA) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10652 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944758 Published Annotation - Entrez Gene Database ID: 944758
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13738 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786201 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000068 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13738 Published Annotation - Swiss-Prot Accession Number: P13738 Jan 2005
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note Na+/H antiporter, pH dependent; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009268 - response to pH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73130.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009268 response to pH Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000008 nhaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001307 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000720 nhaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000640 nhaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001622 nhaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000249 nhaA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003714 nhaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003521 nhaA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000860 nhaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001276 nhaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005023 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015135 nhaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003684 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001062 nhaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298007 nhaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003147 nhaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000748 nhaA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000839 nhaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008619 nhaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000021 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006563 nhaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000018 nhaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004288 nhaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009732 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008883 nhaA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076084 nhaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000005 nhaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000058 nhaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009251 nhaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009558 nhaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000024 nhaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004467 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002949 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009255 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007767 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008272 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009047 nhaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004857 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009180 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008575 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008773 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006127 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008358 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005742 nhaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005403 nhaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023926 nhaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009998 nhaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004700 nhaA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000319 nhaA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000090 nhaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000021 nhaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000353 nhaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000334 nhaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000168 nhaA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000024 nhaA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174217 nhaA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000017 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000018 nhaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129896 nhaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001435 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000023 nhaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000218 nhaA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004303 nhaA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000017 nhaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003059 nhaA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005031 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000001 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004517 nhaA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000013 nhaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004236 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000697 nhaA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003612 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008383 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004127 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287658 nhaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003839 nhaA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064197 nhaA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003146 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002254 nhaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008866 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138103 nhaA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004609 nhaA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004226 nhaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003102 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000039 nhaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004322 nhaA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000131 nhaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000130 nhaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006792 nhaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004412 nhaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008057 nhaA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004376 nhaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004858 nhaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008468 nhaA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004417 nhaA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006016 nhaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000042 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000041 nhaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000051 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004720 nhaA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007332 nhaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004139 nhaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004282 nhaA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105363 nhaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081752 nhaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000049 nhaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090756 nhaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004470 nhaA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008357 nhaA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004336 nhaA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000095 nhaA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264902 nhaA CDS
Person Approved Go view Shigella boydii 227 ADV-0000021 nhaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005415 nhaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006878 nhaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000020 nhaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070941 nhaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086381 nhaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000015 nhaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000024 nhaA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001800 nhaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001700 VC1627 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000464 nhaA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006758 nhaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000083 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001877 ant CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000250 nhaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003244 nhaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001809 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243211 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004900 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004844 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005892 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002850 nhaA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116930 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005240 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007626 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007265 nhaA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033486 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004651 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000435 nhaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003781 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007802 nhaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007479 nhaA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000655 nhaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000759 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004254 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002110 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000181 nhaA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 12489 to 23655
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000052dnaKCDSforward1216314079Upstream
ABE-0000054dnaJCDSforward1416815298Upstream
ABE-0000056mobile_elementforward1538716731Upstream
ABE-0000058insL-1CDSforward1544516557Upstream
ABE-0000064mokCCDScomplement1675116960Upstream
ABE-0047278hokCCDScomplement1675116903Upstream
ABE-0047238sokCncRNAforward1695217006Upstream
ABE-0000068nhaACDSforward1748918655Matches
ABE-0000072nhaRCDSforward1871519620Downstream
ABE-0285261pseudogenecomplement1965819795Downstream
ABE-0000073mobile_elementcomplement1979620563Downstream
ABE-0000075insB-1CDScomplement1981120314Downstream
ABE-0000078insA-1CDScomplement2023320508Downstream
ABE-0000082rpsTCDScomplement2081521078Downstream
ABE-0000089yaaYCDSforward2118121399Downstream
ABE-0000091ribFCDSforward2140722348Downstream
ABE-0000094ileSCDSforward2239125207Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.