Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000094 (ileS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000094 showshow history
Names
ileS ilvS JW0024 ECK0027 b0026
Product
isoleucyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 22391 25207 2817 939
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000012
EnteroFam0000094: Trusted threshold=2652.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Apr 2008
Automated Process Approved IPR009008 (IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain) Apr 2008
Automated Process Approved IPR002300 (IPR002300 Aminoacyl-tRNA synthetase, class Ia) Apr 2008
Automated Process Approved IPR013155 (IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding) Apr 2008
Automated Process Approved IPR010663 (IPR010663 Zinc finger, FPG/IleRS-type) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR002301 (IPR002301 Isoleucine-tRNA ligase) Apr 2008
Automated Process Approved PF00133 (PF00133 tRNA synthetases class I (I, L, M and V)) Jul 2018
Automated Process Approved PF06827 (PF06827 Zinc finger found in FPG and IleRS) Jul 2018
Automated Process Approved PF08264 (PF08264 Anticodon-binding domain of tRNA ligase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006428 isoleucyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002301
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR002301, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004822 isoleucine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002301
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010663
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ileS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym ilvS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0024 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0027 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0026 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product isoleucyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name isoleucine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000094: Trusted threshold=2652.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000012
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Protein Sequence Similarity - InterPro Domain: IPR009008
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002300 Aminoacyl-tRNA synthetase, class Ia Protein Sequence Similarity - InterPro Domain: IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00133 tRNA synthetases class I (I, L, M and V) Protein Sequence Similarity - PFAM Model Name: PF00133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06827 Zinc finger found in FPG and IleRS Protein Sequence Similarity - PFAM Model Name: PF06827
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08264 Anticodon-binding domain of tRNA ligase Protein Sequence Similarity - PFAM Model Name: PF08264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002301 Isoleucine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002301
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR013155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010663 Zinc finger, FPG/IleRS-type Protein Sequence Similarity - InterPro Domain: IPR010663
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.5 Published Annotation - Swiss-Prot Accession Number: P00956 Feb 2006
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000094 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00956 Published Annotation - Swiss-Prot Accession Number: P00956 Jan 2005
Automated Process Approved db xref GeneID:944761 Published Annotation - Entrez Gene Database ID: 944761
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:2367096 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00956 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10492 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note isoleucine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73137.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006428 isoleucyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002301
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR002301, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004822 isoleucine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002301
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010663
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000012 ileS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001669 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000272 ileS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000205 ileS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000213 ileS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000508 ileS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003041 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003716 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129419 ileS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104865 ileS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104257 ileS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003710 ileS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003516 ileS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000864 ileS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001282 ileS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005027 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016739 ileS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003680 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001067 ileS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298018 ileS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003143 ileS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000752 ileS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000833 ileS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009049 ileS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000025 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006554 ileS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000021 ileS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004284 ileS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009722 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009369 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076090 ileS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000017 ileS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000065 ileS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009669 ileS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010173 ileS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000029 ileS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004477 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002961 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009266 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007778 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008283 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009820 ileS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004868 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009516 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008588 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008784 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006139 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009612 ileS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005413 ileS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023938 ileS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009392 ileS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004709 ileS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000324 ileS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000096 ileS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000028 ileS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000343 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000325 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000215 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000030 ileS CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000025 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000025 ileS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129908 ileS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001447 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000029 ileS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000223 ileS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004299 ileS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000022 ileS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003064 ileS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005035 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000005 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004522 ileS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000016 ileS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004233 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000701 ileS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003609 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008387 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004131 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287662 ileS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003843 ileS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064193 ileS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002258 ileS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000994 ileS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002250 ileS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008862 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138113 ileS CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000824 ileS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004233 ileS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003098 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000046 ileS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004330 ileS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000152 ileS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000148 ileS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006785 ileS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004418 ileS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007270 ileS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004382 ileS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004865 ileS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008475 ileS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004424 ileS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006010 ileS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000049 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000048 ileS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000058 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004727 ileS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006077 ileS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004145 ileS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004288 ileS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105378 ileS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081759 ileS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000056 ileS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090773 ileS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004463 ileS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007261 ileS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004343 ileS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000099 ileS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267168 ileS CDS
Person Approved Go view Shigella boydii 227 ADV-0000029 ileS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005426 ileS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007375 ileS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000054 ileS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070949 ileS CDS
Person Approved Go view Shigella flexneri 301 ABT-0086387 ileS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000022 ileS CDS
Person Approved Go view Shigella sonnei 046 ADD-0000035 ileS CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001795 ileS CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0000741 VC0682 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000461 ileS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006767 ileS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000087 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001888 b0026 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000246 ileS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003240 ileS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001805 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243205 ileS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004895 ileS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004849 ileS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005896 ileS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002845 ileS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116948 ileS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005236 ileS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007630 ileS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001665 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007194 ileS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007261 ileS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033482 ileS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004647 ileS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000440 ileS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003777 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007806 ileS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007475 ileS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000659 ileS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000764 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004250 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002125 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000176 ileS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 17391 to 30207
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000068nhaACDSforward1748918655Upstream
ABE-0000072nhaRCDSforward1871519620Upstream
ABE-0285261pseudogenecomplement1965819795Upstream
ABE-0000073mobile_elementcomplement1979620563Upstream
ABE-0000075insB-1CDScomplement1981120314Upstream
ABE-0000078insA-1CDScomplement2023320508Upstream
ABE-0000082rpsTCDScomplement2081521078Upstream
ABE-0000089yaaYCDSforward2118121399Upstream
ABE-0000091ribFCDSforward2140722348Upstream
ABE-0000094ileSCDSforward2239125207Matches
ABE-0000096lspACDSforward2520725701Overlaps Downstream
ABE-0285321repeat_regionforward2571025795Downstream
ABE-0000101fkpBCDSforward2582626275Downstream
ABE-0000103ispHCDSforward2627727227Downstream
ABE-0000109rihCCDSforward2729328207Downstream
ABE-0000112dapBCDSforward2837429195Downstream
ABE-0000118carACDSforward2965130799Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.