Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000103 (ispH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000103 showshow history
Names
ispH yaaE JW0027 ECK0030 lytB b0029
Product
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 26277 27227 951 317
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000015
EnteroFam0000103: Trusted threshold=884.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003451 (IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase) Apr 2008
Automated Process Approved PF02401 (PF02401 LytB protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0050992 dimethylallyl diphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ispH Experimental - PubMed ID: 11818558
Reference: Escherichia coli 		Aug 2002
Person Approved synonym JW0027 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaaE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0030 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym lytB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0029 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, 4Fe-4S protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0000103: Trusted threshold=884.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000015
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02401 LytB protein Protein Sequence Similarity - PFAM Model Name: PF02401
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Protein Sequence Similarity - InterPro Domain: IPR003451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.17.7.4 Published Annotation - Swiss-Prot Accession Number: P62623
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11081 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000103 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P62623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944777 Published Annotation - Entrez Gene Database ID: 944777
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P62623 Published Annotation - Swiss-Prot Accession Number: P62623 Jan 2006
Automated Process Approved db xref GI:1786212 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73140.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0050992 dimethylallyl diphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003451
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000015 ispH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001672 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000359 ispH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000272 ispH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000212 ispH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000557 ispH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003044 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003719 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129417 lytB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104863 lytB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104255 lytB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003707 ispH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003513 ispH CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000867 ispH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001285 ispH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005030 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016736 ispH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003677 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001070 ispH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298031 lytB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003140 ispH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000755 ispH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000830 ispH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009046 ispH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000028 ispH pseudogene
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006551 ispH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000024 lytB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004281 ispH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009719 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009671 ispH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009372 ispH pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076093 ispH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000020 ispH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000068 ispH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009666 ispH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010176 ispH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000032 ispH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004480 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002964 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009269 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007781 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008286 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009817 ispH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004871 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009519 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008591 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008787 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006142 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008372 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009615 ispH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005416 ispH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023941 ispH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009389 ispH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004712 ispH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000327 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000099 ispH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000031 ispH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000340 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000322 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000212 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000033 ispH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174225 ispH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000028 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000028 ispH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129911 ispH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001450 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000032 lytB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000226 ispH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004296 ispH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000025 ispH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003067 ispH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005038 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000008 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004525 ispH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000019 ispH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004230 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000704 ispH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003606 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008390 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004134 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287665 ispH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003846 ispH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064190 ispH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002247 ispH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000991 ispH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002247 ispH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008859 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138117 lytB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000827 ispH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004237 ispH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003095 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000050 ispH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004333 ispH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000165 lytB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000161 lytB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006782 ispH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004422 ispH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007266 ispH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004386 ispH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004869 ispH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008479 ispH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004427 ispH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006007 ispH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000052 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000051 lytB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000061 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004730 ispH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006073 ispH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004149 ispH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004292 ispH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105388 ispH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081762 ispH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000060 ispH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090780 ispH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004460 ispH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007257 ispH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004346 ispH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000102 ispH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267165 lytB CDS
Person Approved Go view Shigella boydii 227 ADV-0000032 lytB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005429 ispH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007378 ispH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000057 lytB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070952 ispH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086391 ispH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000025 lytB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000038 ispH CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0000443 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001792 ispH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000744 VC0685 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135791 lytB CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000459 ispH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006774 ispH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000090 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001899 b0029 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000243 ispH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003237 ispH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001802 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243198 ispH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004892 ispH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004852 ispH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005899 ispH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002842 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116962 ispH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005233 ispH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007633 ispH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001662 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007191 ispH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007258 ispH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033479 ispH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004644 ispH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000443 ispH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003774 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007809 ispH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007472 ispH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000662 ispH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004247 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002143 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000173 ispH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 21277 to 32227
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000089yaaYCDSforward2118121399Upstream
ABE-0000091ribFCDSforward2140722348Upstream
ABE-0000094ileSCDSforward2239125207Upstream
ABE-0000096lspACDSforward2520725701Upstream
ABE-0285321repeat_regionforward2571025795Upstream
ABE-0000101fkpBCDSforward2582626275Upstream
ABE-0000103ispHCDSforward2627727227Matches
ABE-0000109rihCCDSforward2729328207Downstream
ABE-0000112dapBCDSforward2837429195Downstream
ABE-0000118carACDSforward2965130799Downstream
ABE-0000121carBCDSforward3081734038Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.