Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000112 (dapB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000112 showshow history
Names
dapB JW0029 ECK0032 b0031
Product
dihydrodipicolinate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 28374 29195 822 274
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000016
EnteroFam0000112: Trusted threshold=722.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000846 (IPR000846 Dihydrodipicolinate reductase, N-terminal) Apr 2008
Automated Process Approved IPR011770 (IPR011770 (DEPRECATED) Dihydrodipicolinate reductase, bacterial/plant) Apr 2008
Automated Process Approved IPR022663 (IPR022663 Dihydrodipicolinate reductase, C-terminal) Jul 2018
Automated Process Approved IPR023940 (IPR023940 Dihydrodipicolinate reductase) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF05173 (PF05173 Dihydrodipicolinate reductase, C-terminus) Jul 2018
Automated Process Approved PF01113 (PF01113 Dihydrodipicolinate reductase, N-terminus) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022663, IPR000846, IPR023940
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011770
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dapB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0032 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0029 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0031 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydrodipicolinate reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name dihydrodipicolinate reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000112: Trusted threshold=722.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000016
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR023940 Dihydrodipicolinate reductase Protein Sequence Similarity - InterPro Domain: IPR023940
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000846 Dihydrodipicolinate reductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR000846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022663 Dihydrodipicolinate reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR022663
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF05173 Dihydrodipicolinate reductase, C-terminus Protein Sequence Similarity - PFAM Model Name: PF05173
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011770 (DEPRECATED) Dihydrodipicolinate reductase, bacterial/plant Protein Sequence Similarity - InterPro Domain: IPR011770
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01113 Dihydrodipicolinate reductase, N-terminus Protein Sequence Similarity - PFAM Model Name: PF01113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.17.1.8 Published Annotation - Swiss-Prot Accession Number: P04036
Reference: Escherichia coli K-12 		Mar 2014
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04036 Published Annotation - Swiss-Prot Accession Number: P04036 Jan 2005
Automated Process Approved db xref GeneID:944762 Published Annotation - Entrez Gene Database ID: 944762
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786214 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04036 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000112 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10206 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Lysine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73142.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022663, IPR000846, IPR023940
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011770
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000016 dapB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001673 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000173 dapB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000186 dapB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000417 dapB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000524 dapB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003045 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003720 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129416 dapB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104862 dapB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104254 dapB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003679 dapB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003510 dapB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000886 dapB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001295 dapB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005032 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016734 dapB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003675 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001071 dapB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298033 dapB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003139 dapB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000756 dapB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000827 dapB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009044 dapB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000030 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006549 dapB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000027 dapB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004278 dapB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009717 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009673 dapB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009374 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076097 dapB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000022 dapB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000070 dapB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009664 dapB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010178 dapB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000034 dapB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004482 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002967 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009271 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007783 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008288 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009815 dapB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004873 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009521 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008593 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008789 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006144 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008374 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009617 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005418 dapB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023943 dapB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009387 dapB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004714 dapB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000330 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000101 dapB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000033 dapB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000338 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000320 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000210 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000036 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174228 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000030 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000030 dapB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129913 dapB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001453 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000035 dapB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000230 dapB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004291 dapB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000040 dapB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003071 dapB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005039 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000009 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004526 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000020 dapB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004229 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000705 dapB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003605 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008391 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004135 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287666 dapB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003848 dapB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064189 dapB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002270 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000990 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002246 dapB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008858 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138132 dapB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004579 dapB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004253 dapB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003093 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000067 dapB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004349 dapB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000209 dapB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000204 dapB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006767 dapB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004437 dapB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007251 dapB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004401 dapB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004884 dapB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008494 dapB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004443 dapB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005991 dapB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000067 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000066 dapB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000079 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004745 dapB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006057 dapB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004165 dapB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004308 dapB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105415 dapB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081777 dapB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000076 dapB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090821 dapB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004444 dapB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007241 dapB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004362 dapB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000107 dapB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264695 dapB CDS
Person Approved Go view Shigella boydii 227 ADV-0000034 dapB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005431 dapB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007380 dapB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000059 dapB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070954 dapB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086393 dapB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000027 dapB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000040 dapB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001783 dapB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002484 VC2391 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000242 dapB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006783 dapB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000091 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001901 b0031 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000242 dapB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003534 dapB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001801 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243193 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004890 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004854 dapB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005901 dapB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002839 dapB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116968 dapB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005231 dapB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007636 dapB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001661 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007188 dapB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007255 dapB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033475 dapB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007880 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000446 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003773 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007812 dapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007470 dapB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000664 dapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000769 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004246 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002178 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000163 dapB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 23374 to 34195
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000094ileSCDSforward2239125207Upstream
ABE-0000096lspACDSforward2520725701Upstream
ABE-0285321repeat_regionforward2571025795Upstream
ABE-0000101fkpBCDSforward2582626275Upstream
ABE-0000103ispHCDSforward2627727227Upstream
ABE-0000109rihCCDSforward2729328207Upstream
ABE-0000112dapBCDSforward2837429195Matches
ABE-0000118carACDSforward2965130799Downstream
ABE-0000121carBCDSforward3081734038Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.