Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000136 (caiB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000136 showshow history
Names
caiB yaaN JW0037 ECK0039 b0038
Product
crotonobetainyl CoA:carnitine CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 37898 39115 1218 406
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003673 (IPR003673 CoA-transferase family III) Apr 2008
Automated Process Approved IPR023606 (IPR023606 CoA-transferase family III domain 1 superfamily) Jul 2018
Automated Process Approved PF02515 (PF02515 CoA-transferase family III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042413 carnitine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name caiB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0037 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaaN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0039 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0038 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product crotonobetainyl CoA:carnitine CoA transferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name l-carnitine dehydratase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name l-carnitine dehydratase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02515 CoA-transferase family III Protein Sequence Similarity - PFAM Model Name: PF02515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023606 CoA-transferase family III domain 1 superfamily Protein Sequence Similarity - InterPro Domain: IPR023606
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003673 CoA-transferase family III Protein Sequence Similarity - InterPro Domain: IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.8.3.- Published Annotation - Swiss-Prot Accession Number: P31572 Feb 2006
Person Uncurated MultiFun 1.7.22 (metabolism; central intermediary metabolism; carnitine metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11559 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948997 Published Annotation - Entrez Gene Database ID: 948997
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31572 Published Annotation - Swiss-Prot Accession Number: P31572 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31572 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786222 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000136 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note l-carnitine dehydratase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0042413 - carnitine catabolic process; GO_process: GO:0009310 - amine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73149.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042413 carnitine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006047 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003176 caiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003360 caiB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003001 caiB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003504 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000893 caiB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001302 caiB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000039 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006540 caiB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000035 caiB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004268 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009709 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009683 caiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009383 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005457 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076107 caiB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000032 caiB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000079 caiB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009654 caiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010188 caiB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000042 caiB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004491 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002976 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009280 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007792 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008297 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009806 caiB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004882 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009530 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008602 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008798 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006153 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008383 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009626 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005427 caiB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023951 caiB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009377 caiB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004723 caiB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000342 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000108 caiB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000040 caiB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000329 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000311 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000201 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000046 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000040 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000040 caiB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129920 caiB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001462 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000045 caiB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000194 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004261 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003078 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000077 caiB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004358 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000243 caiB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000237 caiB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006758 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004445 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007242 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004410 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004893 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008503 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004450 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005981 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000075 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000074 caiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000090 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004753 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006047 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004175 caiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004318 caiB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105440 caiB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081784 caiB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000086 caiB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090851 caiB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004437 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007232 caiB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004370 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007388 caiB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000066 caiB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070961 caiB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086400 caiB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000034 caiB CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012842 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004030 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 32898 to 44115
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000121carBCDSforward3081734038Downstream
ABE-0000125caiFCDSforward3430034695Downstream
ABE-0285322repeat_regionforward3472734762Downstream
ABE-0000128caiECDScomplement3478135371Downstream
ABE-0000130caiDCDScomplement3537736162Downstream
ABE-0000133caiCCDScomplement3627137824Downstream
ABE-0000136caiBCDScomplement3789839115Matches
ABE-0285323repeat_regionforward3915139232Upstream
ABE-0000139caiACDScomplement3924440386Upstream
ABE-0000141caiTCDScomplement4041741931Upstream
ABE-0000145fixACDSforward4240343173Upstream
ABE-0000147fixBCDSforward4318844129Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.