Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000141 (caiT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000141 showshow history
Names
caiT yaaP JW0039 ECK0041 b0040
Product
L-carnitine:gamma-butyrobetaine antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 40417 41931 1515 505
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000060 (IPR000060 BCCT transporter family) Apr 2008
Automated Process Approved PF02028 (PF02028 BCCT, betaine/carnitine/choline family transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name caiT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0041 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaaP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0039 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0040 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-carnitine:gamma-butyrobetaine antiporter Experimental - PubMed ID: 12163501
Reference: Escherichia coli 		May 2020
Person Approved alternate product name probable carnitine transporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative betaine/carnitine/choline transport protein (BCCT family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02028 BCCT, betaine/carnitine/choline family transporter Protein Sequence Similarity - PFAM Model Name: PF02028
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000060 BCCT transporter family Protein Sequence Similarity - InterPro Domain: IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.15 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Betaine/Carnitine/Choline Transporter (BCCT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.27 (transport; substrate; carnitine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11561 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000141 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P31553 Published Annotation - Swiss-Prot Accession Number: P31553 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31553 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944765 Published Annotation - Entrez Gene Database ID: 944765
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative transport; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable carnitine transporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73151.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005215 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003118 caiT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003203 caiT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004724 caiT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003002 caiT CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003502 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000895 caiT CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001304 caiT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000816 caiT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009033 caiT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000041 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006538 caiT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000037 caiT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004266 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009707 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009685 caiT CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010406 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076109 caiT CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000034 caiT pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000081 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009652 caiT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010190 caiT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000044 caiT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004493 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002978 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009282 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007794 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008299 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009804 caiT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004884 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009532 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008604 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008800 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006155 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008385 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009628 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005429 caiT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023953 caiT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009375 caiT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004725 caiT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000344 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000110 caiT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000042 caiT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000327 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000309 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000199 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000048 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000042 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000042 caiT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129922 caiT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001464 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000047 caiT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000192 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004263 caiT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003076 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000080 caiT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004360 caiT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000251 caiT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000245 caiT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006756 caiT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004447 caiT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007240 caiT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004412 caiT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004895 caiT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008505 caiT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004452 caiT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005979 caiT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000077 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000076 caiT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000093 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004755 caiT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006045 caiT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004177 caiT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004320 caiT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105445 caiT CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081786 caiT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000089 caiT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090857 caiT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004435 caiT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007230 caiT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004372 caiT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007390 caiT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000068 caiT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070964 caiT CDS
Person Approved Go view Shigella flexneri 301 ABT-0086402 caiT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000036 caiT CDS
Person Approved Go view Shigella sonnei 046 ADD-0000054 caiT CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012849 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004028 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 35417 to 46931
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000130caiDCDScomplement3537736162Downstream
ABE-0000133caiCCDScomplement3627137824Downstream
ABE-0000136caiBCDScomplement3789839115Downstream
ABE-0285323repeat_regionforward3915139232Downstream
ABE-0000139caiACDScomplement3924440386Downstream
ABE-0000141caiTCDScomplement4041741931Matches
ABE-0000145fixACDSforward4240343173Upstream
ABE-0000147fixBCDSforward4318844129Upstream
ABE-0000149fixCCDSforward4418045466Upstream
ABE-0000151fixXCDSforward4546345750Upstream
ABE-0000156yaaUCDSforward4580747138Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.