Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000161 (kefC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000161 showshow history
Names
kefC JW0046 ECK0048 trkC b0047
Product
potassium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 47769 49631 1863 621
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003148 (IPR003148 Regulator of K+ conductance, N-terminal) Apr 2008
Automated Process Approved IPR006153 (IPR006153 Cation/H+ exchanger) Apr 2008
Automated Process Approved IPR004771 (IPR004771 K+/H+ exchanger) Apr 2008
Automated Process Approved IPR006036 (IPR006036 Potassium uptake protein TrkA) Apr 2008
Automated Process Approved IPR023941 (IPR023941 Glutathione-regulated potassium-efflux system protein KefC) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00999 (PF00999 Sodium/hydrogen exchanger family) Jul 2018
Automated Process Approved PF02254 (PF02254 TrkA-N domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0051595 response to methylglyoxal GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006153
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015643 toxic substance binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0019899 enzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0015503 glutathione-regulated potassium exporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0015386 potassium:proton antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kefC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym trkC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0048 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0046 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0047 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product potassium:proton antiporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name K+ efflux antiporter, glutathione-regulated, NAD(P)-binding (CPA2 family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name K+ efflux antiporter, glutathione-regulated Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family PF00999 Sodium/hydrogen exchanger family Protein Sequence Similarity - PFAM Model Name: PF00999
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004771 K+/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR004771
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006036 Potassium uptake protein TrkA Protein Sequence Similarity - InterPro Domain: IPR006036
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02254 TrkA-N domain Protein Sequence Similarity - PFAM Model Name: PF02254
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR006153 Cation/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR023941 Glutathione-regulated potassium-efflux system protein KefC Protein Sequence Similarity - InterPro Domain: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR003148 Regulator of K+ conductance, N-terminal Protein Sequence Similarity - InterPro Domain: IPR003148
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 4.2.A.37 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Monovalent Cation:Proton Antiporter-2 (CPA2) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.97 (transport; substrate; K+/H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000161 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10521 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P03819 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944773 Published Annotation - Entrez Gene Database ID: 944773
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P03819 Published Annotation - Swiss-Prot Accession Number: P03819 Jan 2005
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note K+ efflux antiporter, glutathione-regulated; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015386 - potassium:hydrogen antiporter activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73158.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0051595 response to methylglyoxal GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006153
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0019899 enzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0015643 toxic substance binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0015386 potassium:proton antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015503 glutathione-regulated potassium exporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023941
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006605 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002770 kefC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002860 kefC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002152 kefC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002712 kefC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003674 kefC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003493 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000903 kefC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001312 kefC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001078 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000807 kefC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009026 kefC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000048 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006531 kefC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000043 kefC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004259 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009692 kefC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009672 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076117 kefC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000042 kefC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000088 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010197 kefC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000051 kefC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004502 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002987 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009289 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007801 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008306 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009797 kefC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004891 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009539 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008611 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008807 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006162 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008392 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009635 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005436 kefC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023960 kefC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009368 kefC_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004734 kefC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000351 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000117 kefC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000049 kefC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000320 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000302 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000192 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000055 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174246 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000049 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000050 kefC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129929 kefC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001473 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000054 kefC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000234 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004286 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000045 kefC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003078 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004333 kefC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004277 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003068 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000097 kefC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004369 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000285 kefC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000275 kefC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006745 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004460 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007226 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004425 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004907 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008517 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004465 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005965 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000089 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000088 kefC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000112 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004767 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006033 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004191 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004333 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105469 kefC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081800 kefC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000105 kefC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090897 kefC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004422 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007218 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004386 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000111 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265047 CDS
Person Approved Go view Shigella boydii 227 ADV-0000041 kefC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005437 kefC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007397 kefC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000076 kefC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070971 kefC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086409 kefC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000043 kefC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000061 kefC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001776 kefC CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002205 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000157 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23034mutantTn5 InsertionRequest the StrainABE-0000161kefCkefC::Tn5KAN-I-SceI at position 1000 in Minus orientation ,+ pKD460Blattner Laboratory
FB23321mutantTn5 InsertionRequest the StrainABE-0000161kefCkefC::Tn5KAN-I-SceI at position 1000 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 42769 to 54631
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000145fixACDSforward4240343173Upstream
ABE-0000147fixBCDSforward4318844129Upstream
ABE-0000149fixCCDSforward4418045466Upstream
ABE-0000151fixXCDSforward4546345750Upstream
ABE-0000156yaaUCDSforward4580747138Upstream
ABE-0000159kefFCDSforward4724647776Overlaps Upstream
ABE-0000161kefCCDSforward4776949631Matches
ABE-0000164folACDSforward4982350302Downstream
ABE-0285324repeat_regionforward5032750363Downstream
ABE-0000167apaHCDScomplement5038051222Downstream
ABE-0000169apaGCDScomplement5122951606Downstream
ABE-0000175rsmACDScomplement5160952430Downstream
ABE-0000178pdxACDScomplement5242753416Downstream
ABE-0000180surACDScomplement5341654702Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.