Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000164 (folA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000164 showshow history
Names
folA JW0047 ECK0049 tmrA b0048
Product
dihydrofolate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 49823 50302 480 160
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000019
EnteroFam0000164: Trusted threshold=460.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012259 (IPR012259 Dihydrofolate reductase) Apr 2008
Automated Process Approved IPR001796 (IPR001796 Dihydrofolate reductase domain) Apr 2008
Automated Process Approved IPR024072 (IPR024072 Dihydrofolate reductase-like domain superfamily) Jul 2018
Automated Process Approved PF00186 (PF00186 Dihydrofolate reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0046654 tetrahydrofolate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001796, IPR012259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001796, IPR012259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009165 nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006545 glycine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004146 dihydrofolate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name folA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0047 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0049 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym tmrA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0048 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydrofolate reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name dihydrofolate reductase type I; trimethoprim resistance Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dihydrofolate reductase type I, trimethoprim resistance Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000164: Trusted threshold=460.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000019
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR024072 Dihydrofolate reductase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR024072
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001796 Dihydrofolate reductase domain Protein Sequence Similarity - InterPro Domain: IPR001796
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00186 Dihydrofolate reductase Protein Sequence Similarity - PFAM Model Name: PF00186
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012259 Dihydrofolate reductase Protein Sequence Similarity - InterPro Domain: IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.5.1.3 Published Annotation - Swiss-Prot Accession Number: P0ABQ4 Feb 2006
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10326 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABQ4 Published Annotation - Swiss-Prot Accession Number: P0ABQ4 Jan 2006
Automated Process Approved db xref GI:1786233 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944790 Published Annotation - Entrez Gene Database ID: 944790
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABQ4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dihydrofolate reductase type I; trimethoprim resistance; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73159.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046654 tetrahydrofolate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001796, IPR012259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001796, IPR012259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009165 nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006545 glycine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004146 dihydrofolate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000019 folA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001677 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000291 folA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000307 folA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000502 folA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000745 folA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003052 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003728 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129413 folA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104859 folA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104251 folA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003671 folA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003492 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000904 folA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001313 folA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005039 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016722 folA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003668 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001079 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298059 folA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003135 folA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000761 folA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000806 folA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009025 folA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000049 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006530 folA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000044 folA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004258 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009699 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009693 folA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009673 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076118 folA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000043 folA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000089 dyrA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009643 folA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010198 folA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000052 folA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004503 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002988 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009290 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007802 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008307 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009796 folA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004892 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009540 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008612 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008808 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006163 folA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008393 folA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009636 folA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005437 folA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023961 folA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009367 folA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004735 folA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000352 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000118 folA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000050 folA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000319 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000301 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000191 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000056 folA CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174247 folA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000050 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000051 folA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129930 folA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001474 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000055 folA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000236 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004282 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000046 folA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003079 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005048 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000013 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004530 folA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000027 folA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004221 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000712 folA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003598 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008395 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004139 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287671 folA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003853 folA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064181 folA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002216 folA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000985 folA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002240 folA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008849 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138145 folA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000439 folA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004278 folA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003067 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000098 folA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004371 folA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000290 folA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000280 folA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006743 folA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004462 folA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007225 folA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004427 folA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004908 folA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008518 folA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004466 folA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005963 folA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000090 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000089 folA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000114 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004768 folA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006032 folA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004193 folA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004335 folA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105471 folA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081801 folA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000107 folA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090900 folA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004421 folA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007217 folA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004388 folA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000115 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267288 folA CDS
Person Approved Go view Shigella boydii 227 ADV-0000042 folA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005438 folA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007398 folA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000077 folA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070972 folA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086410 folA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000044 folA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000062 folA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001774 folA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000479 VC0440 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000245 folA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007299 folA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000097 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001929 folA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000236 folA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003528 folA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001795 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243175 folA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004883 folA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004861 folA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005908 folA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002833 folA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117001 folA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005224 folA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007644 folA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001670 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007181 folA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007248 folA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033469 folA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007887 folA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000453 folA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003766 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007818 folA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007464 folA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000670 folA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000776 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004239 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002209 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000156 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 44823 to 55302
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000149fixCCDSforward4418045466Upstream
ABE-0000151fixXCDSforward4546345750Upstream
ABE-0000156yaaUCDSforward4580747138Upstream
ABE-0000159kefFCDSforward4724647776Upstream
ABE-0000161kefCCDSforward4776949631Upstream
ABE-0000164folACDSforward4982350302Matches
ABE-0285324repeat_regionforward5032750363Downstream
ABE-0000167apaHCDScomplement5038051222Downstream
ABE-0000169apaGCDScomplement5122951606Downstream
ABE-0000175rsmACDScomplement5160952430Downstream
ABE-0000178pdxACDScomplement5242753416Downstream
ABE-0000180surACDScomplement5341654702Downstream
ABE-0000183lptDCDScomplement5475557109Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.