Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000167 (apaH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000167 showshow history
Names
apaH cfcB JW0048 ECK0050 b0049
Product
diadenosine tetraphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 50380 51222 843 281
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000020
EnteroFam0000167: Trusted threshold=775.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Apr 2008
Automated Process Approved IPR004617 (IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)) Apr 2008
Automated Process Approved PF00149 (PF00149 Calcineurin-like phosphoesterase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008803 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004617
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name apaH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0048 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cfcB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0050 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0049 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product diadenosine tetraphosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000167: Trusted threshold=775.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000020
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00149 Calcineurin-like phosphoesterase Protein Sequence Similarity - PFAM Model Name: PF00149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Protein Sequence Similarity - InterPro Domain: IPR004617
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.1.41 Published Annotation - Swiss-Prot Accession Number: P05637 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786234 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05637 Published Annotation - Swiss-Prot Accession Number: P05637 Jan 2005
Automated Process Approved db xref GeneID:944770 Published Annotation - Entrez Gene Database ID: 944770
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05637 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000167 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73160.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008803 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004617
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000020 apaH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001678 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000223 apaH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000242 apaH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001843 apaH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000418 apaH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003053 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003729 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129412 apaH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104858 apaH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104250 apaH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003670 apaH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003491 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000905 apaH CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001314 apaH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005041 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016718 apaH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003666 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001080 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298062 apaH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003134 apaH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000762 apaH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000803 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009024 apaH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000052 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006529 apaH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000045 apaH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004254 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009698 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009694 apaH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009676 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076121 apaH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000044 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009640 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010199 apaH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000055 apaH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004504 apaH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002991 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009293 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007805 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008310 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009793 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004895 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009543 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008615 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008811 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006166 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008396 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009639 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005440 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023965 apaH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009364 apaH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004736 apaH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000355 apaH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000119 apaH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000051 apaH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000300 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000190 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000059 apaH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174251 apaH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000051 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000054 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129933 apaH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001477 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000057 apaH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000237 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004281 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000047 apaH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003080 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005049 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000015 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004532 apaH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000028 apaH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004220 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000713 apaH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003597 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008396 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004141 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287672 apaH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003855 apaH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064178 apaH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004041 apaH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004213 apaH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002238 apaH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008844 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138146 apaH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000552 apaH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004279 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003066 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000101 apaH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004372 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000294 apaH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000284 apaH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006742 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004463 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007224 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004428 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004909 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008519 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004467 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005962 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000091 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000090 apaH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000115 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004769 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006031 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004194 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004336 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105474 apaH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081802 apaH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000108 apaH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090901 apaH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004420 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007216 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004389 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000117 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267283 apaH CDS
Person Approved Go view Shigella boydii 227 ADV-0000043 apaH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005439 apaH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007401 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000080 apaH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070974 apaH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086411 apaH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000045 apaH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000063 apaH CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0000448 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001773 apaH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000480 VC0441 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135505 apaH CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000246 apaH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007297 apaH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000098 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001932 apaH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000234 apaH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003527 apaH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001794 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243171 apaH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004879 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004867 apaH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005914 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002829 apaH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117009 apaH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005218 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008460 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001669 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007175 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007242 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033465 apaH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007893 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000459 apaH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003762 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007461 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000673 apaH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000779 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004235 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002213 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000155 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 45380 to 56222
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000149fixCCDSforward4418045466Downstream
ABE-0000151fixXCDSforward4546345750Downstream
ABE-0000156yaaUCDSforward4580747138Downstream
ABE-0000159kefFCDSforward4724647776Downstream
ABE-0000161kefCCDSforward4776949631Downstream
ABE-0000164folACDSforward4982350302Downstream
ABE-0285324repeat_regionforward5032750363Downstream
ABE-0000167apaHCDScomplement5038051222Matches
ABE-0000169apaGCDScomplement5122951606Upstream
ABE-0000175rsmACDScomplement5160952430Upstream
ABE-0000178pdxACDScomplement5242753416Upstream
ABE-0000180surACDScomplement5341654702Upstream
ABE-0000183lptDCDScomplement5475557109Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.