Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000178 (pdxA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000178 showshow history
Names
pdxA JW0051 ECK0053 b0052
Product
4-hydroxy-L-threonine phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 52427 53416 990 330
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000023
EnteroFam0000178: Trusted threshold=850.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005255 (IPR005255 PdxA family) Apr 2008
Automated Process Approved PF04166 (PF04166 Pyridoxal phosphate biosynthetic protein PdxA) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pdxA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0053 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0051 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0052 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 4-hydroxy-L-threonine phosphate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name NAD-dependent dehydrogenase/carboxylase, pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name pyridoxine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000178: Trusted threshold=850.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000023
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04166 Pyridoxal phosphate biosynthetic protein PdxA Protein Sequence Similarity - PFAM Model Name: PF04166
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005255 PdxA family Protein Sequence Similarity - InterPro Domain: IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.1.1.262 Published Annotation - Swiss-Prot Accession Number: P19624 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000178 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10691 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P19624 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P19624 Published Annotation - Swiss-Prot Accession Number: P19624 Jan 2005
Automated Process Approved db xref GeneID:944919 Published Annotation - Entrez Gene Database ID: 944919
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786237 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pyridoxine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note pyridoxine biosynthesis; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73163.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000023 pdxA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001681 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000544 pdxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000365 pdxA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000442 pdxA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000668 pdxA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003056 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003732 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003667 pdxA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003488 pdxA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000908 pdxA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001317 pdxA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005044 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016714 pdxA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003663 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001083 pdxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298069 pdxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003131 pdxA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000765 pdxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000800 pdxA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009021 pdxA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000055 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006526 pdxA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000048 pdxA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004251 pdxA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009695 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009697 pdxA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009679 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076125 pdxA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000047 pdxA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000095 pdxA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009637 pdxA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010202 pdxA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000058 pdxA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004507 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002994 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009296 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007808 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008313 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009790 pdxA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004898 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009546 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008618 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008814 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006169 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008399 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009642 pdxA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005443 pdxA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023968 pdxA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009361 pdxA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004739 pdxA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000358 pdxA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000122 pdxA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000054 pdxA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000312 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000297 pdxA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000187 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000063 pdxA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174254 pdxA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000054 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000057 pdxA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129936 pdxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001480 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000060 pdxA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000240 pdxA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004278 pdxA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000050 pdxA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003083 pdxA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005052 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000018 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004535 pdxA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000031 pdxA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004217 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000716 pdxA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003594 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008399 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004144 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287675 pdxA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003858 pdxa1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064175 pdxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002225 pdxA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002176 pdxA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002235 pdxA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008841 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138151 pdxA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000555 pdxA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004282 pdxA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003063 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000104 pdxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004375 pdxA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000301 pdxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000291 pdxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006739 pdxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004466 pdxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007221 pdxA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004431 pdxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004912 pdxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008522 pdxA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004470 pdxA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005959 pdxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000094 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000093 pdxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000118 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004772 pdxA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006028 pdxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004197 pdxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004339 pdxA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105479 pdxA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081805 pdxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000111 pdxA_1 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090906 pdxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004417 pdxA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007213 pdxA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004392 pdxA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000120 pdxA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267280 pdxA CDS
Person Approved Go view Shigella boydii 227 ADV-0000046 pdxA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005442 pdxA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007404 pdxA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000083 pdxA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070977 pdxA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086414 pdxA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000048 pdxA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000066 pdxA CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0000451 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001770 pdxA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000483 VC0444 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135503 pdxA CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000248 pdxA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007294 pdxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000101 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001938 pdxA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000231 pdxA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003524 pdxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001791 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243166 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004876 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004870 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005917 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002826 pdxA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117014 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005215 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008457 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003494 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007172 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007239 pdxA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033462 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007896 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000462 pdxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003759 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007827 pdxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007458 pdxA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000676 pdxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000782 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004232 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002222 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000152 pdxA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 47427 to 58416
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000159kefFCDSforward4724647776Downstream
ABE-0000161kefCCDSforward4776949631Downstream
ABE-0000164folACDSforward4982350302Downstream
ABE-0285324repeat_regionforward5032750363Downstream
ABE-0000167apaHCDScomplement5038051222Downstream
ABE-0000169apaGCDScomplement5122951606Downstream
ABE-0000175rsmACDScomplement5160952430Overlaps Downstream
ABE-0000178pdxACDScomplement5242753416Matches
ABE-0000180surACDScomplement5341654702Overlaps Upstream
ABE-0000183lptDCDScomplement5475557109Upstream
ABE-0000187djlACDSforward5736458179Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.