Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000221 (araA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000221 showshow history
Names
araA JW0061 ECK0063 b0062
Product
L-arabinose isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 66835 68337 1503 501
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000030
EnteroFam0000221: Trusted threshold=1375.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003762 (IPR003762 L-arabinose isomerase) Apr 2008
Automated Process Approved IPR024664 (IPR024664 L-arabinose isomerase, C-terminal) Jul 2018
Automated Process Approved IPR009015 (IPR009015 L-fucose isomerase, N-terminal/central domain superfamily) Jul 2018
Automated Process Approved IPR004216 (IPR004216 L-fucose/L-arabinose isomerase, C-terminal) Jul 2018
Automated Process Approved PF02610 (PF02610 L-arabinose isomerase) Jul 2018
Automated Process Approved PF11762 (PF11762 L-arabinose isomerase C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0005996 monosaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008733 L-arabinose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name araA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0061 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0063 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0062 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-arabinose isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-arabinose isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000221: Trusted threshold=1375.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000030
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003762 L-arabinose isomerase Protein Sequence Similarity - InterPro Domain: IPR003762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02610 L-arabinose isomerase Protein Sequence Similarity - PFAM Model Name: PF02610
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024664 L-arabinose isomerase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR024664
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004216 L-fucose/L-arabinose isomerase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004216
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11762 L-arabinose isomerase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF11762
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009015 L-fucose isomerase, N-terminal/central domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.3.1.4 Published Annotation - Swiss-Prot Accession Number: P08202 Feb 2006
Automated Process Uncurated EC number 5.3.1.- Published Annotation - Database Name: EC2GO: GO:0016861
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947511 Published Annotation - Entrez Gene Database ID: 947511
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08202 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10052 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786248 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08202 Published Annotation - Swiss-Prot Accession Number: P08202 Jan 2005
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73173.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0005996 monosaccharide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009015
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008733 L-arabinose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000030 araA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001062 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002011 araA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002099 araA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003625 araA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002090 araA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002779 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001980 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003657 araA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000916 araA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001326 araA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006947 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015564 araA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001977 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001091 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301416 araA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001889 araA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001832 araA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000792 araA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008729 araA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000064 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006518 araA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000056 araA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004243 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009685 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009100 araA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008089 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076135 araA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000055 araA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000104 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009473 araA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009820 araA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000066 araA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004515 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002534 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009307 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007817 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008498 araA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004907 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009475 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008628 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007630 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010691 araA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009609 araA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009176 araA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009851 araA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023977 araA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009504 araA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004747 araA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000369 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000064 araA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000304 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000289 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000179 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000071 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174262 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000063 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000065 araA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129945 araA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001490 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000068 araA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002940 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000062 araA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003091 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006646 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001171 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003929 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001185 araA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002930 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001886 araA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002340 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009503 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002584 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289268 araA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005011 araA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062539 araA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001408 araA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001780 araA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000561 araA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006905 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004295 araA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003052 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000116 araA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004386 araA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000337 araA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000326 araA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006728 araA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004477 araA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007210 araA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004444 araA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004922 araA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008532 araA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004483 araA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005947 araA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000106 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000105 araA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000131 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004782 araA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006017 araA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004208 araA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004350 araA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105507 araA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081817 araA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000122 araA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090932 araA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004406 araA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007200 araA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004403 araA CDS
Person Approved Go view Shigella boydii 227 ADV-0000054 araA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005450 araA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000097 araA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070987 araA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000056 araA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000074 araA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001760 araA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002793 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005882 araA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003013 araA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003343 araA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000397 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239193 araA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006372 araA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001949 araA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004749 araA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001204 araA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122749 araA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007105 araA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007670 araA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003028 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007461 araA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005973 araA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031801 araA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005725 araA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002074 araA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001051 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007110 araA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005858 araA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002256 araA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002663 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002366 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002266 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000144 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0000221 araA lambda repressor assay Doodle - bnumber: b0062 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 61835 to 73337
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000198rapACDScomplement6035863264Downstream
ABE-0000202polBCDScomplement6342965780Downstream
ABE-0000209araDCDScomplement6585566550Downstream
ABE-0285325repeat_regionforward6656566812Downstream
ABE-0000221araACDScomplement6683568337Matches
ABE-0000223araBCDScomplement6834870048Upstream
ABE-0000236araCCDSforward7038771265Upstream
ABE-0000241yabICDSforward7135172115Upstream
ABE-0285326repeat_regionforward7213672220Upstream
ABE-0000244thiQCDScomplement7222972927Upstream
ABE-0000246thiPCDScomplement7291174521Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.