Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000223 (araB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000223 showshow history
Names
araB JW0062 ECK0064 b0063
Product
L-ribulokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 68348 70048 1701 567
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000031
EnteroFam0000223: Trusted threshold=1508.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Apr 2008
Automated Process Approved IPR005929 (IPR005929 Ribulokinase) Apr 2008
Automated Process Approved IPR018485 (IPR018485 Carbohydrate kinase, FGGY, C-terminal) Jul 2018
Automated Process Approved PF02782 (PF02782 FGGY family of carbohydrate kinases, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005929
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019572 L-arabinose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005929
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005929
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008741 ribulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005929
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name araB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0064 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0062 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0063 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-ribulokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000223: Trusted threshold=1508.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000031
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005929 Ribulokinase Protein Sequence Similarity - InterPro Domain: IPR005929
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02782 FGGY family of carbohydrate kinases, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02782
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018485 Carbohydrate kinase, FGGY, C-terminal Protein Sequence Similarity - InterPro Domain: IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.7.1.- Published Annotation - Database Name: EC2GO: GO:0016773
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.1.16 Published Annotation - Swiss-Prot Accession Number: P08204 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10053 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08204 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000223 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08204 Published Annotation - Swiss-Prot Accession Number: P08204 Jan 2005
Automated Process Approved db xref GeneID:946017 Published Annotation - Entrez Gene Database ID: 946017
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786249 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73174.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005929
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019572 L-arabinose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005929
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005929
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008741 ribulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005929
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000031 araB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001061 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001974 araB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002020 araB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003623 araB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002114 araB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001979 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003656 araB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000917 araB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001327 araB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006946 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015565 araB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001978 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001092 araB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301418 araB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001890 araB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001831 araB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000791 araB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008728 araB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000065 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006517 araB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000057 araB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004242 araB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009684 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009099 araB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008088 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076136 araB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000056 araB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000105 araB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009474 araB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009819 araB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000067 araB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004516 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002535 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009308 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007818 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008499 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009537 araB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004908 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009476 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008629 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007631 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010692 araB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009608 araB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009177 araB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009852 araB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023978 araB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009503 araB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004748 araB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000370 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000065 araB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000303 araB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000288 araB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000178 araB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000072 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174263 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000064 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000066 araB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129946 araB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001491 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000069 araB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002939 araB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000063 araB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003092 araB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006645 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001172 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003928 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001186 araB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002929 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001887 araB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002339 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009504 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002585 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289267 araB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005012 araB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062538 araB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001378 araB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001779 araB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000560 araB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006906 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004296 araB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003051 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004387 araB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000339 araB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000328 araB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006727 araB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004478 araB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007209 araB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004445 araB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004923 araB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008533 araB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004484 araB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005946 araB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000107 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000106 araB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000132 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004783 araB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006016 araB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004209 araB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004351 araB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105508 araB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081818 araB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000123 araB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090935 araB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004405 araB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007199 araB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004404 araB CDS
Person Approved Go view Shigella boydii 227 ADV-0000055 araB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005451 araB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000098 araB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070988 araB CDS
Person Approved Go view Shigella flexneri 301 ABT-0255901 araB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000057 araB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000075 araB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001759 araB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002792 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005884 araB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003012 araB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003344 araB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000398 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239194 araB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006373 araB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001950 araB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004750 araB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001203 araB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122751 araB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007104 araB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007669 araB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003029 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007460 araB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005972 araB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031802 araB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005724 araB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002075 araB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001050 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007109 araB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005857 araB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002257 araB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002664 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002365 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002273 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000143 araB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 63348 to 75048
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000202polBCDScomplement6342965780Downstream
ABE-0000209araDCDScomplement6585566550Downstream
ABE-0285325repeat_regionforward6656566812Downstream
ABE-0000221araACDScomplement6683568337Downstream
ABE-0000223araBCDScomplement6834870048Matches
ABE-0000236araCCDSforward7038771265Upstream
ABE-0000241yabICDSforward7135172115Upstream
ABE-0285326repeat_regionforward7213672220Upstream
ABE-0000244thiQCDScomplement7222972927Upstream
ABE-0000246thiPCDScomplement7291174521Upstream
ABE-0000249thiBCDScomplement7449775480Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.