Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000244 (thiQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000244 showshow history
Names
thiQ sfuC yabJ JW0065 ECK0067 b0066
Product
ATP-binding component of an ABC superfamily thiamine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 72229 72927 699 233
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000034
EnteroFam0000244: Trusted threshold=512.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR005968 (IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071934 thiamine transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thiQ Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0065 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0067 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yabJ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved synonym sfuC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0066 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily thiamine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name thiamine transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative ATP-binding component of a transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name ATP-binding component of thiamin ABC transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name thiamin transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0000244: Trusted threshold=512.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000034
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ Protein Sequence Similarity - InterPro Domain: IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.3.- Published Annotation - Swiss-Prot Accession Number: P31548
Reference: Escherichia coli K-12 		Mar 2007
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.177 (transport; substrate; thiamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11572 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944785 Published Annotation - Entrez Gene Database ID: 944785
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31548 Published Annotation - Swiss-Prot Accession Number: P31548 Jan 2005
Automated Process Approved db xref GI:1786253 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31548 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000244 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of a transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73177.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 3.70
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 6.29
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0071934 thiamine transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000034 thiQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001691 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001273 thiQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001008 thiQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000445 thiQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001292 thiQ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003652 thiQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003479 thiQ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000920 thiQ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001330 thiQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005071 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016687 thiQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003651 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001095 thiQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298099 thiQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003123 thiQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000773 thiQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000787 thiQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008725 thiQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000070 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006514 thiQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000062 thiQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004236 thiQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009681 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009096 thiQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008085 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076143 thiQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000059 thiQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000108 thiQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009477 thiQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009816 thiQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000075 thiQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004519 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002538 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009311 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007821 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008502 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009534 thiQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004911 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009479 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008632 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007634 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010695 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009605 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009180 thiQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009855 thiQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023981 thiQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009496 thiQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004751 thiQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000373 thiQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000068 thiQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000299 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000284 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000174 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000079 thiQ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000067 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000071 thiQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129949 thiQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001494 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000075 thiQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000248 thiQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004267 thiQ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000066 yabJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003095 thiQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005075 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000026 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004543 thiQ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000040 thiQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004209 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000724 thiQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003586 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008407 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004153 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287683 thiQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003866 thiQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064163 thiQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002233 thiQ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002170 thiQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002217 thiQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008822 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138162 thiQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004299 thiQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003048 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000122 thiQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004390 thiQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000351 yabJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000339 yabJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006724 thiQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004481 thiQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007206 thiQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004448 thiQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004926 thiQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008536 thiQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004487 thiQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005943 thiQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000110 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000109 thiQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000135 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004786 thiQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006013 thiQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004212 thiQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004354 thiQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105515 thiQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081821 thiQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000126 thiQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090957 thiQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004402 thiQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007196 thiQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004407 thiQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000131 thiQ CDS
Person Approved Go view Shigella boydii 227 ADV-0000058 yabJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005454 thiQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007201 thiQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000101 yabJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070992 thiQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0086425 yabJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000060 yabJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000078 thiQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001756 thiQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002636 VC2537 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007272 thiQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000109 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001966 thiQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000223 thiQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002634 thiQ CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243118 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007061 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004265 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005945 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002798 thiQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117078 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005186 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008428 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001453 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007143 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007750 thiQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033433 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007926 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000495 thiQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003727 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007570 thiQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007431 thiQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000703 thiQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000814 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004200 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002299 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000139 thiQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20006mutantTn5 InsertionRequest the StrainABE-0000244thiQyabJ::Tn5KAN-I-SceI at position 419 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 67229 to 77927
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000221araACDScomplement6683568337Downstream
ABE-0000223araBCDScomplement6834870048Downstream
ABE-0000236araCCDSforward7038771265Downstream
ABE-0000241yabICDSforward7135172115Downstream
ABE-0285326repeat_regionforward7213672220Downstream
ABE-0000244thiQCDScomplement7222972927Matches
ABE-0000246thiPCDScomplement7291174521Overlaps Upstream
ABE-0000249thiBCDScomplement7449775480Upstream
ABE-0285787sroAncRNAcomplement7551675608Upstream
ABE-0000251sgrRCDScomplement7564477299Upstream
ABE-0285090sgrSncRNAforward7736777593Upstream
ABE-0285206sgrTCDSforward7738877519Upstream
ABE-0000257setACDSforward7762178799Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.