Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000246 (thiP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000246 showshow history
Names
thiP sfuB yabK JW0066 ECK0068 b0067
Product
membrane component of an ABC superfamily thiamine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 72911 74521 1611 537
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000035
EnteroFam0000246: Trusted threshold=1310.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR005947 (IPR005947 Thiamine ABC transporter, permease protein) Apr 2008
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015888 thiamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005947
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thiP Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0068 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0066 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sfuB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym yabK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Approved locus tag b0067 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily thiamine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Protein Family
Person Approved EnteroFam EnteroFam0000246: Trusted threshold=1310.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000035
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR005947 Thiamine ABC transporter, permease protein Protein Sequence Similarity - InterPro Domain: IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.177 (transport; substrate; thiamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11573 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000246 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31549 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P31549 Published Annotation - Swiss-Prot Accession Number: P31549 Jan 2005
Automated Process Approved db xref GeneID:944784 Published Annotation - Entrez Gene Database ID: 944784
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1786254 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73178.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015888 thiamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005947
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005947
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000035 thiP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001692 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001048 thiP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000750 thiP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000706 thiP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001048 thiP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003126 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003750 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003651 thiP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003478 thiP CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000921 thiP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001331 thiP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005072 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016686 thiP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003650 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001096 thiP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298103 thiP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003122 thiP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000774 thiP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000786 thiP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008724 thiP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000071 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006513 thiP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000063 thiP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004235 thiP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009679 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009095 thiP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008084 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076144 thiP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000060 thiP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000109 thiP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009478 thiP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009815 thiP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000076 thiP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004520 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009312 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007822 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008503 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009533 thiP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004912 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009480 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008633 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007635 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010696 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009604 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009181 thiP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009856 thiP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023982 thiP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009495 cysW_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004752 thiP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000374 thiP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000069 thiP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000298 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000283 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000080 thiP CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174270 thiP CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000068 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000072 thiP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129950 thiP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001495 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000076 thiP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000249 thiP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004266 thiP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000067 thiP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003096 thiP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005076 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000027 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004544 thiP CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000041 thiP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004208 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000725 thiP CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003585 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008408 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004154 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287684 thiP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003867 thiP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064162 thiP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002230 thiP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002169 thiP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002216 thiP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008820 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138163 thiP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004300 thiP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003047 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000123 thiP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004391 thiP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000355 yabK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000343 yabK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006723 thiP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004482 thiP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007205 thiP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004449 thiP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004927 thiP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008537 thiP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004488 thiP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005942 thiP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000111 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000110 thiP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000136 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004787 thiP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006012 thiP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004213 thiP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004355 thiP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105519 thiP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081822 thiP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000127 thiP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090959 thiP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004401 thiP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007195 thiP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004408 thiP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000132 thiP CDS
Person Approved Go view Shigella boydii 227 ADV-0000059 yabK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005455 thiP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007202 thiP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000102 yabK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070993 thiP CDS
Person Approved Go view Shigella flexneri 301 ABT-0086426 yabK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000061 yabK CDS
Person Approved Go view Shigella sonnei 046 ADD-0000079 thiP CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001755 thiP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002637 VC2538 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007271 thiP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000110 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001971 thiP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000222 thiP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002633 thiP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001782 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243105 thiP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007060 thiP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004263 thiP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005946 thiP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002797 thiP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117082 thiP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005185 thiP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008427 thiP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001452 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007142 thiP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007749 thiP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033432 thiP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007927 thiP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000496 thiP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003725 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007569 thiP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007430 thiP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000704 thiP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000815 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004198 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002309 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000138 thiP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20007mutantTn5 InsertionRequest the StrainABE-0000246thiPyabK::Tn5KAN-I-SceI at position 1064 in Plus orientation ,+ pKD460Blattner Laboratory
FB20008mutantTn5 InsertionRequest the StrainABE-0000246thiPyabK::Tn5KAN-I-SceI at position 1064 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 67911 to 79521
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000221araACDScomplement6683568337Downstream
ABE-0000223araBCDScomplement6834870048Downstream
ABE-0000236araCCDSforward7038771265Downstream
ABE-0000241yabICDSforward7135172115Downstream
ABE-0285326repeat_regionforward7213672220Downstream
ABE-0000244thiQCDScomplement7222972927Overlaps Downstream
ABE-0000246thiPCDScomplement7291174521Matches
ABE-0000249thiBCDScomplement7449775480Overlaps Upstream
ABE-0285787sroAncRNAcomplement7551675608Upstream
ABE-0000251sgrRCDScomplement7564477299Upstream
ABE-0285090sgrSncRNAforward7736777593Upstream
ABE-0285206sgrTCDSforward7738877519Upstream
ABE-0000257setACDSforward7762178799Upstream
ABE-0000259leuDCDScomplement7884879453Upstream
ABE-0000261leuCCDScomplement7946480864Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.