Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000249 (thiB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000249 showshow history
Names
thiB sfuA yabL tbpA JW0067 ECK0069 b0068
Product
periplasmic-binding component of an ABC superfamily thiamine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 74497 75480 984 328
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000036
EnteroFam0000249: Trusted threshold=874.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005948 (IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter) Apr 2008
Automated Process Approved IPR005967 (IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria) Apr 2008
Automated Process Approved IPR006061 (IPR006061 Solute-binding family 1, conserved site) Apr 2008
Automated Process Approved IPR011587 (IPR011587 (DEPRECATED) Prokaryotic extracellular metal-binding protein) Apr 2008
Automated Process Approved PF13343 (PF13343 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015888 thiamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005948, IPR005967
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0030975 thiamine binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005948, IPR005967
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiB Published Annotation - PubMed ID: 9535878
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved synonym JW0067 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym tbpA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym sfuA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yabL Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0069 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0068 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily thiamine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name thiamin-binding periplasmic protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name thiamin transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved alternate product name periplasmic-binding component of thiamin ABC transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0000249: Trusted threshold=874.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000036
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13343 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13343
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011587 (DEPRECATED) Prokaryotic extracellular metal-binding protein Protein Sequence Similarity - InterPro Domain: IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006061 Solute-binding family 1, conserved site Protein Sequence Similarity - InterPro Domain: IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter Protein Sequence Similarity - InterPro Domain: IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria Protein Sequence Similarity - InterPro Domain: IPR005967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.177 (transport; substrate; thiamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11574 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786255 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946306 Published Annotation - Entrez Gene Database ID: 946306
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31550 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000249 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P31550 Published Annotation - Swiss-Prot Accession Number: P31550 Jan 2005
Automated Process Approved note thiamin-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73179.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015888 thiamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005948, IPR005967
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0030975 thiamine binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005948, IPR005967
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000036 thiB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001987 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001302 thiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000844 thiB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000280 thiB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001262 thiB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003127 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003751 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003650 thiB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003477 thiB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000922 tbpA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001332 tbpA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005074 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016685 thiB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003649 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001097 thiB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298109 tbpA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003121 thiB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000775 tbpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000785 thiB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008723 thiB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000072 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006512 thiB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000064 tbpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004234 thiB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009677 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009094 thiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008083 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076145 tbpA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000061 thiB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009479 thiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009814 thiB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000077 tbpA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004521 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002540 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009313 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007823 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008504 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009532 thiB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004913 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009481 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008634 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007636 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010697 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009603 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009182 thiB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009857 thiB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023983 tbpA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009494 thiB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004753 thiB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000375 tbpA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000070 tbpA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000297 thiB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000282 thiB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000081 tbpA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174271 tbpA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000069 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000073 thiB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129951 tbpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001496 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000077 tbpA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000250 thiB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004265 thiB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000068 tbpA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003097 thiB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005078 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000028 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004545 tbpA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000042 tbpA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004207 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000726 tbpA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003584 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008409 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004155 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287685 thiB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003868 thiB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064161 tbpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002232 tbpA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002168 tbpA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008818 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138166 tbpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004301 thiB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003046 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000124 tbpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004392 thiB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000360 tbpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000348 tbpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006722 thiB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004483 thiB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007204 thiB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004450 thiB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004928 thiB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008538 thiB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004489 thiB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005941 thiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000112 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000111 tbpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000137 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004788 thiB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006011 thiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004214 thiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004356 thiB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105521 tbpA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081823 tbpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000128 tbpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090962 tbpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004400 thiB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007194 thiB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004409 thiB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000133 thiB CDS
Person Approved Go view Shigella boydii 227 ADV-0000060 tbpA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005456 thiB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007203 thiB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000103 tbpA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070994 tbpA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086427 tbpA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000062 tbpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000080 tbpA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001754 thiB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002638 VC2539 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007269 tbpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000111 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001975 tbpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000221 thiB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002632 tbpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001781 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243104 tbpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007059 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004261 tbpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005947 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002796 tbpA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117096 tbpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005184 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008426 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001451 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007141 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007748 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033431 tbpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007928 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000498 tbpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003723 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007568 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000705 tbpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000817 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004196 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002321 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000137 thiB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 69497 to 80480
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000223araBCDScomplement6834870048Downstream
ABE-0000236araCCDSforward7038771265Downstream
ABE-0000241yabICDSforward7135172115Downstream
ABE-0285326repeat_regionforward7213672220Downstream
ABE-0000244thiQCDScomplement7222972927Downstream
ABE-0000246thiPCDScomplement7291174521Overlaps Downstream
ABE-0000249thiBCDScomplement7449775480Matches
ABE-0285787sroAncRNAcomplement7551675608Upstream
ABE-0000251sgrRCDScomplement7564477299Upstream
ABE-0285090sgrSncRNAforward7736777593Upstream
ABE-0285206sgrTCDSforward7738877519Upstream
ABE-0000257setACDSforward7762178799Upstream
ABE-0000259leuDCDScomplement7884879453Upstream
ABE-0000261leuCCDScomplement7946480864Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.