Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000257 (setA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000257 showshow history
Names
setA JW0069 ECK0072 yabM b0070
Product
broad specificity sugar efflux system protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 77621 78799 1179 393
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR004750 (IPR004750 Sugar efflux) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004750
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015542 (DEPRECATED) sugar efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015543 (OBSOLETE) lactose/glucose efflux transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name setA Experimental - PubMed ID: 10438463
Reference: Escherichia coli 		Aug 2002
Person Approved synonym yabM Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0072 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0069 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0070 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product broad specificity sugar efflux system protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name Sugar efflux protein Experimental - PubMed ID: 10438463
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name proton-coupled beta-galactosidase, lactose and glucose efflux pump (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR004750 Sugar efflux Protein Sequence Similarity - InterPro Domain: IPR004750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.21 (transport; substrate; lactose/glucose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11754 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000257 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P31675 Published Annotation - Swiss-Prot Accession Number: P31675 Jan 2005
Automated Process Approved db xref GeneID:944793 Published Annotation - Entrez Gene Database ID: 944793
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994875 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015543 - lactose/glucose efflux transporter activity; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48123.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: E128 to A Experimental - GenBank Accession Number: AG613214
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004750
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015542 (DEPRECATED) sugar efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015543 (OBSOLETE) lactose/glucose efflux transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000163 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000073 setA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000070 setA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001159 setA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003779 setA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003647 setA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003475 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000926 setA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001336 setA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001100 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298115 setA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003117 yabM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000778 sotA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008719 setA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006507 setA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009672 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009090 setA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008078 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000064 setA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000115 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009483 setA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009810 setA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004524 setA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004757 setA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000073 setA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000294 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000279 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000270 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000071 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000253 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004262 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000071 setA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003099 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000030 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004547 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000044 setA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004205 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000729 setA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003582 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008411 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004158 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287688 setA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003870 yabM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003041 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000136 CDS
Person Approved Go view Shigella boydii 227 ADV-0000062 setA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005461 setA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070996 yabM CDS
Person Approved Go view Shigella flexneri 301 ABT-0086429 yabM CDS
Person Approved Go view Shigella sonnei 046 ADD-0000082 setA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001751 setA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000115 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001991 setA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000217 setA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002628 setA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001777 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243085 setA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007055 setA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004258 setA_1 CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0005353 setA pseudogene
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005950 setA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004460 setA_1 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256501 setA pseudogene
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005181 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008423 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001449 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007138 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007744 setA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033429 setA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007932 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000501 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003720 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007565 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007424 setA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000710 setA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004192 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002329 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000135 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 72621 to 83799
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000244thiQCDScomplement7222972927Upstream
ABE-0000246thiPCDScomplement7291174521Upstream
ABE-0000249thiBCDScomplement7449775480Upstream
ABE-0285787sroAncRNAcomplement7551675608Upstream
ABE-0000251sgrRCDScomplement7564477299Upstream
ABE-0285090sgrSncRNAforward7736777593Upstream
ABE-0285206sgrTCDSforward7738877519Upstream
ABE-0000257setACDSforward7762178799Matches
ABE-0000259leuDCDScomplement7884879453Downstream
ABE-0000261leuCCDScomplement7946480864Downstream
ABE-0000265leuBCDScomplement8086781958Downstream
ABE-0000267leuACDScomplement8195883529Downstream
ABE-0000269leuLCDScomplement8362283708Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.