Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000259 (leuD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000259 showshow history
Names
leuD JW0070 ECK0073 b0071
Product
3-isopropylmalate isomerase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 78848 79453 606 202
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000037
EnteroFam0000259: Trusted threshold=556.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000573 (IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain) Apr 2008
Automated Process Approved IPR012305 (IPR012305 (DEPRECATED) 3-isopropylmalate dehydratase, small subunit-like) Apr 2008
Automated Process Approved IPR004431 (IPR004431 3-isopropylmalate dehydratase, small subunit) Apr 2008
Automated Process Approved PF00694 (PF00694 Aconitase C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009098 leucine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000573
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009316 3-isopropylmalate dehydratase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003861 3-isopropylmalate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000573
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name leuD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0070 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0073 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0071 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-isopropylmalate isomerase subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name isopropylmalate isomerase subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name 3-isopropylmalate dehydratase small subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name 3-isopropylmalate isomerase, subunit with LeuC Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000259: Trusted threshold=556.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000037
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004431 3-isopropylmalate dehydratase, small subunit Protein Sequence Similarity - InterPro Domain: IPR004431
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012305 (DEPRECATED) 3-isopropylmalate dehydratase, small subunit-like Protein Sequence Similarity - InterPro Domain: IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00694 Aconitase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00694
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Protein Sequence Similarity - InterPro Domain: IPR000573
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.33 Published Annotation - Swiss-Prot Accession Number: P30126 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945642 Published Annotation - Entrez Gene Database ID: 945642
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P30126 Published Annotation - Swiss-Prot Accession Number: P30126 Jan 2005
Automated Process Approved db xref GI:1786258 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30126 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11575 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Leucine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note isopropylmalate isomerase subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73182.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by acetate; expression is reduced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000573
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009098 leucine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009316 3-isopropylmalate dehydratase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003861 3-isopropylmalate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000573
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000037 leuD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001694 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000715 leuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000703 leuD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001268 leuD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000653 leuD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003140 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003754 CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105220 leuD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000736 leuD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003474 leuD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000927 leuD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001340 leuD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005083 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016679 leuD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003643 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001102 leuD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298119 leuD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003116 leuD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000779 leuD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000781 leuD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008718 leuD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000074 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006506 leuD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000066 leuD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004231 leuD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009671 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009089 leuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008077 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076149 leuD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000065 leuD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000116 leuD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009484 leuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009809 leuD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000081 leuD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004525 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002544 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009318 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007828 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008509 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009527 leuD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004918 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009486 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008639 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007640 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010702 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009598 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009186 leuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009862 leuD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023987 leuD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009490 leuD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004758 leuD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000378 leuD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000074 leuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000293 leuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000278 leuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000269 leuD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000072 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000077 leuD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129954 leuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001500 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000079 leuD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000254 leuD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004260 leuD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000078 leuD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003118 leuD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005086 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000031 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004548 leuD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000051 leuD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004197 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000736 leuD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003575 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008412 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004159 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287689 leuD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003871 leuD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064150 leuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002219 leuD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000982 leuD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002206 leuD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008808 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145211 leuD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002218 leuD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004307 leuD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003040 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000128 leuD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004398 leuD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000366 leuD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000352 leuD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006716 leuD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004489 leuD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007198 leuD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004456 leuD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004934 leuD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008544 leuD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004495 leuD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005936 leuD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000114 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000113 leuD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000143 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004794 leuD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006004 leuD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004220 leuD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004362 leuD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105524 leuD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081825 leuD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000132 leuD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090969 leuD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004393 leuD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007188 leuD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004415 leuD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000138 leuD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267881 leuD CDS
Person Approved Go view Shigella boydii 227 ADV-0000063 leuD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005462 leuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007209 leuD CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000107 leuD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070997 leuD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086430 leuD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000065 leuD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000085 leuD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001750 leuD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002586 VC2493 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001566 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002001 leuD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000214 leuD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002625 leuD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001602 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243084 leuD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007054 leuD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004254 leuD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005951 leuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002790 leuD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117127 leuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005176 leuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008597 leuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004203 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007133 leuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007743 leuD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033428 leuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007937 leuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000503 leuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003719 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007560 leuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007423 leuD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000711 leuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000827 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004191 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002333 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000134 leuD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 73848 to 84453
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000246thiPCDScomplement7291174521Downstream
ABE-0000249thiBCDScomplement7449775480Downstream
ABE-0285787sroAncRNAcomplement7551675608Downstream
ABE-0000251sgrRCDScomplement7564477299Downstream
ABE-0285090sgrSncRNAforward7736777593Downstream
ABE-0285206sgrTCDSforward7738877519Downstream
ABE-0000257setACDSforward7762178799Downstream
ABE-0000259leuDCDScomplement7884879453Matches
ABE-0000261leuCCDScomplement7946480864Upstream
ABE-0000265leuBCDScomplement8086781958Upstream
ABE-0000267leuACDScomplement8195883529Upstream
ABE-0000269leuLCDScomplement8362283708Upstream
ABE-0000280leuOCDSforward8436885312Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.