Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000261 (leuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000261 showshow history
Names
leuC JW0071 ECK0074 b0072
Product
3-isopropylmalate isomerase dehydratase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 79464 80864 1401 467
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001030 (IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain) Apr 2008
Automated Process Approved IPR012095 (IPR012095 (DEPRECATED) Homoaconitase/3-isopropylmalate dehydratase, large subunit) Apr 2008
Automated Process Approved IPR004430 (IPR004430 3-isopropylmalate dehydratase, large subunit) Apr 2008
Automated Process Approved IPR036008 (IPR036008 Aconitase, iron-sulfur domain) Jul 2018
Automated Process Approved PF00330 (PF00330 Aconitase family (aconitate hydratase)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009098 leucine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009316 3-isopropylmalate dehydratase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004430
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003861 3-isopropylmalate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name leuC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0071 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0074 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0072 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 3-isopropylmalate isomerase dehydratase subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name 3-isopropylmalate isomerase (dehydratase) subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name 3-isopropylmalate isomerase, subunit with LeuD Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name 3-isopropylmalate dehydratase large subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00330 Aconitase family (aconitate hydratase) Protein Sequence Similarity - PFAM Model Name: PF00330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036008 Aconitase, iron-sulfur domain Protein Sequence Similarity - InterPro Domain: IPR036008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004430 3-isopropylmalate dehydratase, large subunit Protein Sequence Similarity - InterPro Domain: IPR004430
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012095 (DEPRECATED) Homoaconitase/3-isopropylmalate dehydratase, large subunit Protein Sequence Similarity - InterPro Domain: IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Protein Sequence Similarity - InterPro Domain: IPR001030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.33 Published Annotation - Swiss-Prot Accession Number: P0A6A6 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6A6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6A6 Published Annotation - Swiss-Prot Accession Number: P0A6A6 Jan 2006
Automated Process Approved db xref EcoGene:EG11576 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000261 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945076 Published Annotation - Entrez Gene Database ID: 945076
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Leucine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 3-isopropylmalate isomerase (dehydratase) subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73183.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by acetate; expression is reduced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009098 leucine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009316 3-isopropylmalate dehydratase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004430
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003861 3-isopropylmalate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001695 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000553 leuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000595 leuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000187 leuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000128 leuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003141 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003755 CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105221 leuC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000737 leuC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003473 leuC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000928 leuC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001341 leuC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005084 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016678 leuC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003642 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298121 leuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003115 leuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000780 leuC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000780 leuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008717 leuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000075 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006505 leuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000070 leuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004230 leuC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009670 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009088 leuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008076 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076151 leuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000066 leuC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000117 leuC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009485 leuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009808 leuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000082 leuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004526 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002545 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009319 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007829 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008510 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009526 leuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004919 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009487 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008640 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007641 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010703 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009597 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009187 leuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009863 leuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023988 leuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009489 leuC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004759 leuC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000379 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000075 leuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000292 leuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000277 leuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000268 leuC CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000085 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174275 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000073 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000078 leuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129955 leuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001501 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000080 leuC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000255 leuC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004259 leuC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000079 leuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003119 leuC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005087 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000032 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004549 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000052 leuC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004196 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000737 leuC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003574 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008413 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004160 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287690 leuC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003872 leuC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064149 leuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002226 leuC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000981 leuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002205 leuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008807 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145208 leuC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002217 leuC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004308 leuC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003039 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000129 leuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004399 leuC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000368 leuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000354 leuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006715 leuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004490 leuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007197 leuC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004457 leuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004935 leuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008545 leuC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004496 leuC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005935 leuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000115 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000114 leuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000144 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004795 leuC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006003 leuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004221 leuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004363 leuC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105526 leuC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081826 leuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000133 leuC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0090972 leuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004392 leuC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007187 leuC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004416 leuC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000139 leuC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267882 leuC CDS
Person Approved Go view Shigella boydii 227 ADV-0000064 leuC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005463 leuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007210 leuC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000108 leuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0070999 leuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086431 leuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000066 leuC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000086 leuC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001749 leuC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002585 VC2492 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001565 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002003 leuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000213 leuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002624 leuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001603 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243083 leuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007053 leuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004253 leuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005952 leuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002789 leuC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117129 leuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005175 leuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008596 leuC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001701 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007132 leuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007742 leuC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033427 leuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007938 leuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000504 leuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003718 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007559 leuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007422 leuC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000712 leuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000828 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004190 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002336 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000133 leuC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23037mutantTn5 InsertionRequest the StrainABE-0000261leuCleuC::Tn5KAN-I-SceI at position 478 in Plus orientation ,+ pKD460Blattner Laboratory
FB23324mutantTn5 InsertionRequest the StrainABE-0000261leuCleuC::Tn5KAN-I-SceI at position 478 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 74464 to 85864
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000246thiPCDScomplement7291174521Downstream
ABE-0000249thiBCDScomplement7449775480Downstream
ABE-0285787sroAncRNAcomplement7551675608Downstream
ABE-0000251sgrRCDScomplement7564477299Downstream
ABE-0285090sgrSncRNAforward7736777593Downstream
ABE-0285206sgrTCDSforward7738877519Downstream
ABE-0000257setACDSforward7762178799Downstream
ABE-0000259leuDCDScomplement7884879453Downstream
ABE-0000261leuCCDScomplement7946480864Matches
ABE-0000265leuBCDScomplement8086781958Upstream
ABE-0000267leuACDScomplement8195883529Upstream
ABE-0000269leuLCDScomplement8362283708Upstream
ABE-0000280leuOCDSforward8436885312Upstream
ABE-0285808yabRCDScomplement8546785511Upstream
ABE-0000290ilvICDSforward8563087354Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.