Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000294 (ilvH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000294 showshow history
Names
ilvH JW0077 ECK0080 brnP b0078
Product
acetolactate synthase III small subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 87357 87848 492 164
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000040
EnteroFam0000294: Trusted threshold=454.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002912 (IPR002912 ACT domain) Apr 2008
Automated Process Approved IPR004789 (IPR004789 Acetolactate synthase, small subunit) Apr 2008
Automated Process Approved IPR019455 (IPR019455 Acetolactate synthase, small subunit, C-terminal) Jul 2018
Automated Process Approved PF13710 (PF13710 ACT domain) Jul 2018
Automated Process Approved PF10369 (PF10369 Small subunit of acetolactate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003984 acetolactate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ilvH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0080 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0077 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym brnP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0078 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acetolactate synthase III small subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name acetolactate synthase III, valine sensitive, small subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name acetolactate synthase III, small subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000294: Trusted threshold=454.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000040
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF10369 Small subunit of acetolactate synthase Protein Sequence Similarity - PFAM Model Name: PF10369
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019455 Acetolactate synthase, small subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR019455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13710 ACT domain Protein Sequence Similarity - PFAM Model Name: PF13710
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004789 Acetolactate synthase, small subunit Protein Sequence Similarity - InterPro Domain: IPR004789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.2.1.6 Published Annotation - Swiss-Prot Accession Number: P00894 Feb 2006
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00894 Published Annotation - Swiss-Prot Accession Number: P00894 Jan 2005
Automated Process Approved db xref GI:1786266 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947267 Published Annotation - Entrez Gene Database ID: 947267
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00894 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10499 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Isoleucine, Valine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetolactate synthase III, valine sensitive, small subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73189.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003984 acetolactate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004789
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000040 ilvH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001699 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000485 ilvH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001112 ilvH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001765 ilvH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000939 ilvH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003146 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003760 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129495 ilvH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104933 ilvH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104335 ilvH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000744 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003468 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000934 ilvH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001347 ilvH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005089 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018279 ilvH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003637 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001108 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298142 ilvH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003110 ilvH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000784 ilvH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000774 ilvH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008710 ilvH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000081 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006497 ilvH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000075 ilvH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004223 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009664 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009079 ilvH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008067 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076159 ilvH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000075 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000124 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009494 ilvH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009799 ilvH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000088 ilvH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004531 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002552 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009327 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007836 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008518 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009518 ilvH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004927 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009495 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008648 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007648 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010711 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009589 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009194 ilvH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009871 ilvH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0023994 ilvH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009481 ilvH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004766 ilvH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000384 ilvH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000081 ilvH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000286 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000271 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000262 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000093 ilvH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174280 ilvH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000081 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000085 ilvH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129961 ilvH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001507 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000087 ilvH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000261 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004253 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000084 ilvH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003124 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005092 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000037 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004554 ilvH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000056 ilvH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004192 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000741 ilvH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003570 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008417 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004164 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287694 ilvH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003876 ilvH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064144 ilvH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002207 ilvH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002162 ilvH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002198 ilvH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008802 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145181 ilvH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001004 ilvN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004314 ilvH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003033 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000137 ilvH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004405 ilvH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000393 ilvH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000378 ilvH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006709 ilvH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004496 ilvN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007191 ilvH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004463 ilvH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004941 ilvH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008552 ilvH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004502 ilvH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005929 ilvN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000121 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000120 ilvH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000152 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004801 ilvH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005997 ilvH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004227 ilvN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004370 ilvN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105545 ilvH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081832 ilvH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000141 ilvH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091001 ilvH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004386 ilvH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007181 ilvH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004422 ilvH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000147 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265859 ilvH CDS
Person Approved Go view Shigella boydii 227 ADV-0000072 ilvH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005470 ilvH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007220 ilvH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000119 ilvH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071005 ilvH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086437 ilvH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000071 ilvH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000092 ilvH CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001742 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002575 VC2482 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001829 ilvH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001559 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002029 ilvH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000207 ilvH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002618 ilvH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001609 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243078 ilvH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007046 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004246 ilvH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005960 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002780 ilvH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117159 ilvH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005167 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008587 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003874 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007124 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007734 ilvN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033418 ilvH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007947 ilvN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000511 ilvH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003711 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007551 ilvN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007415 ilvN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000718 ilvH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000835 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004183 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002369 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000127 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0000294 ilvH lambda repressor assay Doodle - bnumber: b0078 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 82357 to 92848
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000267leuACDScomplement8195883529Upstream
ABE-0000269leuLCDScomplement8362283708Upstream
ABE-0000280leuOCDSforward8436885312Upstream
ABE-0285808yabRCDScomplement8546785511Upstream
ABE-0000290ilvICDSforward8563087354Upstream
ABE-0000294ilvHCDSforward8735787848Matches
ABE-0000299craCDSforward8802889032Downstream
ABE-0000302mraZCDSforward8963490092Downstream
ABE-0000304rsmHCDSforward9009491035Downstream
ABE-0000306ftsLCDSforward9103291397Downstream
ABE-0000309ftsICDSforward9141393179Downstream
ABE-0285837ftsOncRNAforward9248592658Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.