Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000309 (ftsI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000309 showshow history
Names
ftsI JW0082 ECK0085 sep pbpB b0084
Product
septal peptidoglycan transpeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 91413 93179 1767 589
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR005311 (IPR005311 Penicillin-binding protein, dimerisation domain) Apr 2008
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Apr 2008
Automated Process Approved IPR036138 (IPR036138 Penicillin-binding protein, dimerisation domain superfamily) Jul 2018
Automated Process Approved PF03717 (PF03717 Penicillin-binding Protein dimerisation domain) Jul 2018
Automated Process Approved PF00905 (PF00905 Penicillin binding protein transpeptidase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ftsI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym pbpB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym sep Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0085 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0082 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0084 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product septal peptidoglycan transpeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name PBP3 Published Annotation - PubMed ID: 3902760
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name septum formation; penicillin-binding protein 3; peptidoglycan synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name division-specific transpeptidase, penicillin-binding protein 3 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00905 Penicillin binding protein transpeptidase domain Protein Sequence Similarity - PFAM Model Name: PF00905
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005311 Penicillin-binding protein, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR005311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036138 Penicillin-binding protein, dimerisation domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036138
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03717 Penicillin-binding Protein dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF03717
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.1.129 Published Annotation - Swiss-Prot Accession Number: P0AD68 Feb 2006
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944799 Published Annotation - Entrez Gene Database ID: 944799
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AD68 Published Annotation - Swiss-Prot Accession Number: P0AD68 Jan 2006
Automated Process Approved db xref GI:1786272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AD68 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000309 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Cell division Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note septum formation; penicillin-binding protein 3; peptidoglycan synthetase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73195.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000042 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000063 ftsI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000010 murE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000026 ftsI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000011 murE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003152 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003768 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129492 ftsI CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104930 ftsI CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104332 ftsI CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000939 ftsI_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001352 ftsI_1 CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0005096 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018267 ftsI CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0003631 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0298159 ftsI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003101 ftsI CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000789 ftsI CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0000768 ftsI CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008704 ftsI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000087 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0006491 ftsI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000079 ftsI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004218 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009657 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0009073 ftsI CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0008061 FtsL CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076166 ftsI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000081 ftsI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000130 ftsI CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0009499 ftsI CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009793 ftsI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000094 ftsI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004537 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002559 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0009332 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0007842 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0008524 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009513 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004932 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0009501 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0008654 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0007654 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0010717 ftsI CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0009584 ftsI CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0009200 ftsI CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0009877 ftsI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024000 ftsI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010027 ftsI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004772 ftsI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000389 CDS
Automated Process Approved Go view Escherichia coli K-12 DH10B AEC-0004406 ftsI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000086 ftsI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000279 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000263 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000254 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000100 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000087 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000090 ftsI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129967 ftsI CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0001514 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000094 ftsI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000266 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004247 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005099 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000042 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004559 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000061 ftsI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004187 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000746 ftsI CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003565 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008423 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004169 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287704 ftsI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003881 ftsi1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064138 ftsI CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002197 ftsI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002158 ftsI CDS
Person Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003950 CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0008795 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145167 ftsI CDS
Person Uncurated Go view Pseudomonas aeruginosa PA7 AES-0004990 ftsI CDS
Person Uncurated Go view Pseudomonas aeruginosa PAO1 AEW-0004475 ftsI CDS
Person Uncurated Go view Pseudomonas aeruginosa UCBPP-PA14 AEX-0004667 ftsI CDS
Person Uncurated Go view Pseudomonas entomophila L48 AEV-0004270 ftsI CDS
Person Uncurated Go view Pseudomonas fluorescens Pf-5 AEY-0005075 CDS
Person Uncurated Go view Pseudomonas fluorescens PfO-1 AEZ-0005797 CDS
Person Uncurated Go view Pseudomonas mendocina ymp AFA-0001145 CDS
Person Uncurated Go view Pseudomonas putida F1 AFB-0005420 CDS
Person Uncurated Go view Pseudomonas putida GB-1 AFC-0019040 CDS
Person Uncurated Go view Pseudomonas putida KT2440 AFD-0001357 ftsI CDS
Person Uncurated Go view Pseudomonas putida W619 AFE-0001166 CDS
Person Uncurated Go view Pseudomonas savastanoi NCPPB 3335 AER-0004043 CDS
Person Uncurated Go view Pseudomonas stutzeri A1501 AFF-0001094 ftsI CDS
Person Uncurated Go view Pseudomonas syringae pv. phaseolicola 1448A AFH-0004188 ftsI CDS
Person Uncurated Go view Pseudomonas syringae pv. syringae B728a AFG-0009873 CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004488 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0105555 ftsI CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091016 ftsI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000155 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267873 ftsI CDS
Person Approved Go view Shigella boydii 227 ADV-0000078 ftsI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005475 ftsI CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007225 ftsI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000125 ftsI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071014 ftsI CDS
Person Approved Go view Shigella flexneri 301 ABT-0086445 ftsI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000080 ftsI CDS
Person Approved Go view Shigella sonnei 046 ADD-0000100 ftsI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002500 VC2407 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000370 ftsI CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001839 ftsI CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001553 CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000201 ftsI CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0002612 ftsI CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243059 ftsI CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007039 CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004238 ftsI CDS
Automated Process Approved Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005969 CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002772 ftsI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117183 ftsI CDS
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005155 CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008579 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003880 CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007115 CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007724 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033410 ftsI CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007956 CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000518 ftsI CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003702 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007544 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0007408 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000724 ftsI CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0000841 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0004176 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 86413 to 98179
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000290ilvICDSforward8563087354Upstream
ABE-0000294ilvHCDSforward8735787848Upstream
ABE-0000299craCDSforward8802889032Upstream
ABE-0000302mraZCDSforward8963490092Upstream
ABE-0000304rsmHCDSforward9009491035Upstream
ABE-0000306ftsLCDSforward9103291397Upstream
ABE-0000309ftsICDSforward9141393179Matches
ABE-0285837ftsOncRNAforward9248592658Contained Within
ABE-0000311murECDSforward9316694653Overlaps Downstream
ABE-0000313murFCDSforward9465096008Downstream
ABE-0000316mraYCDSforward9600297084Downstream
ABE-0000318murDCDSforward9708798403Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.