Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000311 (murE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000311 showshow history
Names
murE JW0083 ECK0086 b0085
Product
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 93166 94653 1488 496
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000045
EnteroFam0000311: Trusted threshold=1303.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Apr 2008
Automated Process Approved IPR005761 (IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase) Apr 2008
Automated Process Approved IPR012237 (IPR012237 (DEPRECATED) Mur ligase) Apr 2008
Automated Process Approved IPR000713 (IPR000713 Mur ligase, N-terminal catalytic domain) Apr 2008
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Apr 2008
Automated Process Approved IPR036615 (IPR036615 Mur ligase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036565 (IPR036565 Mur-like, catalytic domain superfamily) Jul 2018
Automated Process Approved IPR035911 (IPR035911 MurE/MurF, N-terminal) Jul 2018
Automated Process Approved PF08245 (PF08245 Mur ligase middle domain) Jul 2018
Automated Process Approved PF01225 (PF01225 Mur ligase family, catalytic domain) Jul 2018
Automated Process Approved PF02875 (PF02875 Mur ligase family, glutamate ligase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Experimental - PubMed ID: 3905407
Reference: Escherichia coli 		Apr 2005
Person Approved GO cellular component GO:0005737 cytoplasm Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0008765 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murE Published Annotation - PubMed ID: 2841306
Reference: Escherichia coli 		Jan 2007
Person Approved synonym ECK0086 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0083 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0085 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2,6-diaminopimelate ligase Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Jan 2007
Person Approved alternate product name meso-diaminopimelate-adding enzyme Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Automated Process Approved alternate product name UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000311: Trusted threshold=1303.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000045
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01225 Mur ligase family, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF01225
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02875 Mur ligase family, glutamate ligase domain Protein Sequence Similarity - PFAM Model Name: PF02875
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035911 MurE/MurF, N-terminal Protein Sequence Similarity - InterPro Domain: IPR035911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08245 Mur ligase middle domain Protein Sequence Similarity - PFAM Model Name: PF08245
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036615 Mur ligase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036615
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036565 Mur-like, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000713 Mur ligase, N-terminal catalytic domain Protein Sequence Similarity - InterPro Domain: IPR000713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012237 (DEPRECATED) Mur ligase Protein Sequence Similarity - InterPro Domain: IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase Protein Sequence Similarity - InterPro Domain: IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.-.-.- Published Annotation - Database Name: EC2GO: GO:0016874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.3.2.13 Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Automated Process Uncurated EC number 6.3.2.- Published Annotation - Database Name: EC2GO: GO:0016881
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P22188 Published Annotation - Swiss-Prot Accession Number: P22188 Jan 2005
Person Uncurated db xref NCBI_gi:21321966 Published Annotation - GenPept Accession Number: BAB96653 Apr 2005
Person Uncurated db xref NCBI_gi:581175 Published Annotation - GenPept Accession Number: CAA39334 Apr 2005
Person Uncurated db xref NCBI_gi:581032 Published Annotation - GenPept Accession Number: CAA38862 Apr 2005
Person Uncurated db xref NCBI_gi:2177098 Protein Sequence Similarity - GenPept Accession Number: AAB60789 Apr 2005
Automated Process Approved db xref GeneID:944791 Published Annotation - Entrez Gene Database ID: 944791
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22188 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786273 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000311 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated physical properties Molecular Weight: 56 kD; by SDS-PAGE. Experimental - PubMed ID: 2841306
Reference: Escherichia coli 		Mar 2005
Person Uncurated physical properties Vmax: 2.3 x 10^-5 M/min/mg protein; for UDP-N-acetylmuramoyl-L-alanyl-D-glutamate, meso-2,6-diaminoheptanedioate, ATP. Experimental - PubMed ID: 3905407
Reference: Escherichia coli 		Mar 2005
Person Uncurated physical properties Km: 55 microM; for UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. Experimental - PubMed ID: 3905407
Reference: Escherichia coli 		Mar 2005
Person Uncurated physical properties pH optimum: 8.0. Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Person Uncurated physical properties Km: 36 microM; for meso-2,6-diaminoheptanedioate. Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Person Uncurated physical properties Km: 620 microM; for ATP. Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Person Uncurated physical properties Km: 76 microM; for UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Automated Process Approved protein id AAC73196.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1E8C, wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmuramoyl-l- alanine-D-glutamate;2.0 A; X-ray diffraction Experimental - PubMed ID: 11124264
Reference: Escherichia coli 		Mar 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Experimental - PubMed ID: 2269304
Reference: Escherichia coli 		Apr 2005
Person Approved GO cellular component GO:0005737 cytoplasm Experimental - PubMed ID: 3905407
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0008765 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000045 murE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001705 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000280 murE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000010 murE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000455 murE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000011 murE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003153 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003769 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129491 murE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104929 murE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000750 murE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003460 murE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000940 murE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001353 murE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005098 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018266 murE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003630 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001115 murE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298164 murE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003100 murE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000790 murE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000767 murE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008703 murE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000088 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006490 murE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000080 murE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004217 murE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009656 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009072 murE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008060 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076167 murE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000082 murE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000131 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009500 murE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009792 murE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000095 murE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004538 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002560 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009333 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007843 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008525 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009512 murE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004933 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009502 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008655 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007655 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010718 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009583 murE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009201 murE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009878 murE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024001 murE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009934 murE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004773 murE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000390 murE CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004407 murE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000087 murE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000278 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000262 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000253 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000101 murE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000088 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000091 murE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129968 murE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001515 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000095 murE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000267 murE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004246 murE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000090 murE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003131 murE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005101 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000043 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004560 murE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000062 murE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004186 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000747 murE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003564 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008424 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004170 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287705 murE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003882 murE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064137 murE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002198 murE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004209 murE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003949 murE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008794 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145165 murE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004487 murE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004321 murE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003025 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000143 murE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004411 murE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000413 murE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000398 murE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006702 murE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004503 murE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007184 murE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004470 murE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004948 murE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008559 murE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004508 murE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005922 murE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000127 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000126 murE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000161 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004808 murE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005991 murE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004233 murE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004377 murE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105557 murE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081838 murE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000150 murE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091019 murE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004379 murE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007174 murE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004429 murE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000156 murE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267872 murE CDS
Person Approved Go view Shigella boydii 227 ADV-0000079 murE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005476 murE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007226 murE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000126 murE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071015 murE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086446 murE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000081 murE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000101 murE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002499 VC2406 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000369 murE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001840 murE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001552 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002051 murE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000200 murE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002611 murE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001616 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243058 murE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007038 murE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004237 murE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005970 murE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002771 murE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117186 murE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005154 murE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008578 murE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003440 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007114 murE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007723 murE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033409 murE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007957 murE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000520 murE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003701 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007543 murE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007407 murE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000725 murE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000843 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004175 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002396 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000121 murE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 88166 to 99653
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000299craCDSforward8802889032Upstream
ABE-0000302mraZCDSforward8963490092Upstream
ABE-0000304rsmHCDSforward9009491035Upstream
ABE-0000306ftsLCDSforward9103291397Upstream
ABE-0000309ftsICDSforward9141393179Overlaps Upstream
ABE-0285837ftsOncRNAforward9248592658Upstream
ABE-0000311murECDSforward9316694653Matches
ABE-0000313murFCDSforward9465096008Overlaps Downstream
ABE-0000316mraYCDSforward9600297084Downstream
ABE-0000318murDCDSforward9708798403Downstream
ABE-0000320ftsWCDSforward9840399647Downstream
ABE-0000322murGCDSforward99644100711Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.