Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000316 (mraY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000316 showshow history
Names
mraY murX JW0085 ECK0088 ORF-Y b0087
Product
phospho-N-acetylmuramoyl-pentapeptide transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 96002 97084 1083 361
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000047
EnteroFam0000316: Trusted threshold=1056.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003524 (IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase) Apr 2008
Automated Process Approved IPR000715 (IPR000715 Glycosyl transferase, family 4) Apr 2008
Automated Process Approved IPR018480 (IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site) Jul 2018
Automated Process Approved PF10555 (PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1) Jul 2018
Automated Process Approved PF00953 (PF00953 Glycosyl transferase family 4) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Experimental - PubMed ID: 10564498
Reference: Escherichia coli 		Apr 2005
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO molecular function GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mraY Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Person Approved synonym ORF-Y Experimental - PubMed ID: 2179861
Reference: Escherichia coli 		Apr 2005
Person Approved synonym ECK0088 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym murX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0085 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0087 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phospho-N-acetylmuramoyl-pentapeptide transferase Experimental - PubMed ID: 1846850
Reference: Escherichia coli K-12 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0000316: Trusted threshold=1056.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000047
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Protein Sequence Similarity - PFAM Model Name: PF10555
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00953 Glycosyl transferase family 4 Protein Sequence Similarity - PFAM Model Name: PF00953
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR018480
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase Protein Sequence Similarity - InterPro Domain: IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000715 Glycosyl transferase, family 4 Protein Sequence Similarity - InterPro Domain: IPR000715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.8.13 Experimental - PubMed ID: 1846850
Reference: Escherichia coli K-12 		Feb 2007
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10604 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6W3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000316 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944814 Published Annotation - Entrez Gene Database ID: 944814
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786275 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6W3 Published Annotation - Swiss-Prot Accession Number: P0A6W3 Jan 2006
Person Approved function catalyzes the transfer of phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide to undecaprenyl-phosphate as first step of the lipid cycle reactions in the peptidoglycan biosynthetic pathway Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Person Uncurated mutant phenotype myaY null:T96401_92402ins; lethal; cells swell and lyze during growth. Experimental - PubMed ID: 9829961
Reference: Escherichia coli 		Apr 2005
Automated Process Approved note phospho-N-acetylmuramoyl-pentapeptide transferase?; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73198.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Experimental - PubMed ID: 10564498
Reference: Escherichia coli 		Apr 2005
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity Experimental - PubMed ID: 1846850
Reference: Escherichia coli 		Apr 2005
Automated Process Approved GO molecular function GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000047 mraY CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001707 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000179 mraY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000165 mraY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000456 mraY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000471 mraY CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003155 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003771 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129489 mraY CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104927 mraY CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000752 mraY CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003458 mraY CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000942 mraY CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001355 mraY CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005100 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018264 mraY CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003628 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001117 mraY CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298172 mraY CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003098 mraY CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000792 mraY CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000765 mraY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008701 mraY CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000090 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006488 mraY CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000082 mraY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004215 mraY CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009654 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009070 mraY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008058 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076169 mraY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000084 mraY CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000133 mraY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009502 mraY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009790 mraY CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000097 mraY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004540 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002562 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009335 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007845 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008527 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009510 mraY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004935 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009504 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008657 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007657 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010720 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009581 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009203 mraY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009880 mraY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024003 mraY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009937 mraY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004775 mraY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000392 mraY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000131 mraY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000089 mraY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000276 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000260 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000251 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000103 mraY CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174290 mraY CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000090 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000093 mraY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129970 mraY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001517 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000097 mraY CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000269 mraY CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004244 mraY CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000092 mraY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003133 mraY CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005103 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000045 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004562 mraY CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000064 mraY CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004184 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000749 mraY CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003562 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008426 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004172 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287707 mraY CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003884 mraY CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064135 mraY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002200 mraY CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002157 mraY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003947 mraY CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008792 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145161 mraY CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004485 mraY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004323 mraY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003023 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000145 mraY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004413 mraY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000421 mraY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000407 mraY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006700 mraY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004505 mraY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007182 mraY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004472 mraY CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004950 mraY CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008561 mraY CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004510 mraY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005920 mraY CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000129 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000128 mraY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000163 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004810 mraY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005989 mraY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004235 mraY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004379 mraY CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105561 mraY CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081840 mraY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000152 mraY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091025 mraY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004377 mraY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007172 mraY CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004431 mraY CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000158 mraY CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267870 mraY CDS
Person Approved Go view Shigella boydii 227 ADV-0000081 mraY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005478 mraY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007228 mraY CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000128 mraY CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071017 mraY CDS
Person Approved Go view Shigella flexneri 301 ABT-0086448 mraY CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000083 mraY CDS
Person Approved Go view Shigella sonnei 046 ADD-0000103 mraY CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001734 mraY CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002497 VC2404 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000367 mraY CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001842 mraY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001550 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002058 mraY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000198 mraY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002609 mraY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001618 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243046 mraY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007036 mraY CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004235 mraY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005972 mraY CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002769 mraY CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117190 mraY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005152 mraY CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008576 mraY CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003442 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007112 mraY CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007721 mraY CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033407 mraY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007959 mraY CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000522 mraY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003699 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007541 mraY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007405 mraY CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000727 mraY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000845 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004173 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002406 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000119 mraY CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 91002 to 102084
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000304rsmHCDSforward9009491035Upstream
ABE-0000306ftsLCDSforward9103291397Upstream
ABE-0000309ftsICDSforward9141393179Upstream
ABE-0285837ftsOncRNAforward9248592658Upstream
ABE-0000311murECDSforward9316694653Upstream
ABE-0000313murFCDSforward9465096008Overlaps Upstream
ABE-0000316mraYCDSforward9600297084Matches
ABE-0000318murDCDSforward9708798403Downstream
ABE-0000320ftsWCDSforward9840399647Downstream
ABE-0000322murGCDSforward99644100711Downstream
ABE-0000324murCCDSforward100765102240Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.