Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000318 (murD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000318 showshow history
Names
murD JW0086 ECK0089 b0088
Product
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 97087 98403 1317 439
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000048
EnteroFam0000318: Trusted threshold=1213.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005762 (IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD) Apr 2008
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Apr 2008
Automated Process Approved IPR012237 (IPR012237 (DEPRECATED) Mur ligase) Apr 2008
Automated Process Approved IPR006162 (IPR006162 Phosphopantetheine attachment site) Apr 2008
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Apr 2008
Automated Process Approved IPR036565 (IPR036565 Mur-like, catalytic domain superfamily) Jul 2018
Automated Process Approved IPR036615 (IPR036615 Mur ligase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF02875 (PF02875 Mur ligase family, glutamate ligase domain) Jul 2018
Automated Process Approved PF08245 (PF08245 Mur ligase middle domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Mar 2005
Person Approved GO molecular function GO:0005524 ATP binding Experimental - PubMed ID: 9218784
Reference: Escherichia coli 		Apr 2005
Person Uncurated GO molecular function GO:0000287 magnesium ion binding Experimental - PubMed ID: 1765076
Reference: Escherichia coli 		Apr 2005
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murD Published Annotation - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Person Approved synonym JW0086 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0089 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0088 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Person Approved alternate product name D-glutamate-adding enzyme Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0000318: Trusted threshold=1213.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000048
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD Protein Sequence Similarity - InterPro Domain: IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036615 Mur ligase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036615
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02875 Mur ligase family, glutamate ligase domain Protein Sequence Similarity - PFAM Model Name: PF02875
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012237 (DEPRECATED) Mur ligase Protein Sequence Similarity - InterPro Domain: IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036565 Mur-like, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006162 Phosphopantetheine attachment site Protein Sequence Similarity - InterPro Domain: IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08245 Mur ligase middle domain Protein Sequence Similarity - PFAM Model Name: PF08245
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.2.9 Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Automated Process Uncurated EC number 6.-.-.- Published Annotation - Database Name: EC2GO: GO:0016874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment Structures 1E09 and 1EEH represent the open conformation with respect to the C-terminal domain. This conformation is thought to facilitate the initial, ATP-binding step of the ligation reaction. Experimental - PubMed ID: 10966819
Reference: Escherichia coli 		Jan 2007
Person Uncurated comment Magnesium and phosphate ions are required for full enzymatic activity. Experimental - PubMed ID: 1765076
Reference: Escherichia coli 		Jan 2007
Person Uncurated comment A lower Km for D-glutamate (55 microM) was reported in PMID:1765076 Experimental - PubMed ID: 1765076
Reference: Escherichia coli 		Jan 2007
Automated Process Approved db xref GI:1786276 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P14900 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944818 Published Annotation - Entrez Gene Database ID: 944818
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated db xref NCBI_gi:21321969 Published Annotation - GenPept Accession Number: CAA38865 Apr 2005
Person Uncurated db xref NCBI_gi:42060 Published Annotation - GenPept Accession Number: CAA35933 Apr 2005
Person Approved db xref UniProtKB:P14900 Published Annotation - Swiss-Prot Accession Number: P14900 Jan 2005
Person Uncurated db xref NCBI_gi:40856 Published Annotation - GenPept Accession Number: CAA38865 Apr 2005
Person Uncurated db xref NCBI_gi:42046 Published Annotation - GenPept Accession Number: CAA35611 Apr 2005
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated physical properties Molecular Weight: 50 kD; by SDS-PAGE. Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Jan 2007
Person Uncurated physical properties Km: 280 microM; for D-glutamate. Experimental - PubMed ID: 3301347
Reference: Escherichia coli 		Jan 2007
Person Uncurated physical properties Molecular Weight: 54 +/- 2 kD; by gel filtration on Superose 12. Experimental - PubMed ID: 3301347
Reference: Escherichia coli 		Jan 2007
Person Uncurated physical properties Km: 5.5 microM; for UDP-N-acetylmuramoyl-L-alanine. Experimental - PubMed ID: 3301347
Reference: Escherichia coli 		Jan 2007
Automated Process Approved protein id AAC73199.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1UAG wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine, SO4--: 1.95 A; X-ray diffraction. Experimental - PubMed ID: 9218784
Reference: Escherichia coli 		Apr 2005
Person Uncurated structure PDB:1EEH wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmurmoyl-L-alanine:1.9 A; X-ray diffraction. Experimental - PubMed ID: 10966819
Reference: Escherichia coli 		Apr 2005
Person Uncurated structure PDB:1E0D wt, whole protein, co-crystallized with SO4--:2.4 A; X-ray diffraction Experimental - PubMed ID: 10966819
Reference: Escherichia coli 		Apr 2005
Person Uncurated structure PDB:2UAG wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine, adenosine-5'-diphosphate, Mg++:1.7 A; X-ray diffraction. Experimental - PubMed ID: 10356330
Reference: Escherichia coli 		Apr 2005
Person Uncurated structure PDB:3UAG wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine, adenosine-5'-diphosphate, Mn++:1.77 A; X-ray diffraction. Experimental - PubMed ID: 10356330
Reference: Escherichia coli 		Apr 2005
Person Uncurated structure PDB:4UAG wt, whole protein, co-crystallized with uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine-D-glutamate, SO4--:1.66 A; X-ray diffraction. Experimental - PubMed ID: 10356330
Reference: Escherichia coli 		Apr 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016879 ligase activity, forming carbon-nitrogen bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012237
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0005524 ATP binding Experimental - PubMed ID: 9218784
Reference: Escherichia coli 		Apr 2005
Person Uncurated GO molecular function GO:0000287 magnesium ion binding Experimental - PubMed ID: 1765076
Reference: Escherichia coli 		Apr 2005
Person Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Mar 2005
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000048 murD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001708 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000239 murD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000178 murD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000250 murD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000802 murD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003156 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003772 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129488 murD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104926 murD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104328 murD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000753 murD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003457 murD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000943 murD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001356 murD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005101 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018263 murD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003627 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001118 murD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298175 murD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003097 murD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000793 murD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000764 murD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008700 murD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000091 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006487 oppB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000083 murD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004214 murD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009069 murD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008057 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076170 murD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000085 murD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000134 murD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009503 murD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009789 murD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000098 murD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004541 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002563 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009336 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007846 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008528 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009509 murD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004936 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009505 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008658 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007658 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010721 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009580 murD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009204 murD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009881 murD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024004 murD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009938 murD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004776 murD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000393 murD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000132 murD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000090 murD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000275 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000259 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000250 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000104 murD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174291 murD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000091 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000094 murD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129971 murD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001518 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000098 murD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000270 murD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004243 murD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000093 murD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003134 murD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005104 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000046 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004563 murD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000065 murD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004183 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000750 murD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003561 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008427 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004173 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287708 murD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003885 murD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064134 murD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002172 murD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0004206 murD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003946 murD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008791 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145159 murD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004484 murD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004324 murD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003022 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000146 murD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004414 murD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000424 murD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000410 murD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006699 murD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004506 murD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007181 murD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004473 murD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004951 murD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008562 murD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004511 murD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005919 murD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000130 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000129 murD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000164 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004811 murD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005988 murD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004236 murD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004380 murD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105563 murD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081841 murD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000153 murD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091028 murD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004376 murD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007171 murD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004432 murD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000159 murD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267869 murD CDS
Person Approved Go view Shigella boydii 227 ADV-0000082 murD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005479 murD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007229 murD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000129 murD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071018 murD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086449 murD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000084 murD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000104 murD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001733 murD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002496 VC2403 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000366 murD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001843 murD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001549 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002061 murD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000197 murD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002608 murD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001619 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243044 murD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007035 murD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004234 murD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005973 murD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002768 murD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117202 murD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005151 murD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008575 murD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003443 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007111 murD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007720 murD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033406 murD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007960 murD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000523 murD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007540 murD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007404 murD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000728 murD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000846 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004172 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002412 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000118 murD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 92087 to 103403
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000309ftsICDSforward9141393179Upstream
ABE-0285837ftsOncRNAforward9248592658Upstream
ABE-0000311murECDSforward9316694653Upstream
ABE-0000313murFCDSforward9465096008Upstream
ABE-0000316mraYCDSforward9600297084Upstream
ABE-0000318murDCDSforward9708798403Matches
ABE-0000320ftsWCDSforward9840399647Overlaps Downstream
ABE-0000322murGCDSforward99644100711Downstream
ABE-0000324murCCDSforward100765102240Downstream
ABE-0000326ddlBCDSforward102233103153Downstream
ABE-0000329ftsQCDSforward103155103985Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.