Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000336 (lpxC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000336 showshow history
Names
lpxC JW0094 asmB ECK0097 envA asmA b0096
Product
UDP-3-O-acyl N-acetylglucosamine deacetylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 106557 107474 918 306
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000055
EnteroFam0000336: Trusted threshold=934.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004463 (IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase) Apr 2008
Automated Process Approved IPR020568 (IPR020568 Ribosomal protein S5 domain 2-type fold) Jul 2018
Automated Process Approved PF03331 (PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase) Jul 2018
Automated Process Uncurated CE11 (CE11 Carbohydrate Esterase Family 11) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 8366124
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 3288280
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Direct Assay - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Direct Assay - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxC Published Annotation - PubMed ID: 8366125
Reference: Escherichia coli K-12 		Jan 2008
Automated Process Approved synonym asmB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0094 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym asmA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0097 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym envA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0096 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-3-O-acyl N-acetylglucosamine deacetylase Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Protein Family
Person Approved EnteroFam EnteroFam0000336: Trusted threshold=934.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000055
Reference: EnteroFams 		Jan 2006
Automated Process Uncurated protein family CE11 Carbohydrate Esterase Family 11 Protein Sequence Similarity - CAZy Model Name: CE11
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Protein Sequence Similarity - PFAM Model Name: PF03331
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020568 Ribosomal protein S5 domain 2-type fold Protein Sequence Similarity - InterPro Domain: IPR020568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase Protein Sequence Similarity - InterPro Domain: IPR004463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.5.1.- Published Annotation - Swiss-Prot Accession Number: P0A725 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment LpxC contains Zn++ that is required for maximal activity. Zinc can only by substituted for Co++ and Ni++ and to a lesser extent Mn++. Metal chelators such as EDTA and dipicolinic acid inhibit activity. Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved db xref GI:1786285 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A725 Published Annotation - Swiss-Prot Accession Number: P0A725 Jan 2006
Automated Process Approved db xref EcoGene:EG10265 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944816 Published Annotation - Entrez Gene Database ID: 944816
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000336 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function second step and first committed step of the Lipid A (endotoxin) biosynthetic pathway Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 		Dec 2007
Person Approved function biosynthesis of UDP-2,3-diacyl-GlcN by removal of an acetyl moiety from the 2-N position of glucosamine in UDP-3-0-[(R)-3-hydroxymyristoyl]-GLcNAc Experimental - PubMed ID: 3288280
Reference: Escherichia coli K-12 		Dec 2007
Person Approved molecular interaction deacetylase activity inhibited by 1 mM N-ethylmaleimide Experimental - PubMed ID: 3288280
Reference: Escherichia coli K-12 		Dec 2007
Person Approved molecular interaction competetively inhibited by antibiotic compound LNTI-229; Ki=104 +/- 19 nM, IC50 >4500 microM, 30 C Experimental - PubMed ID: 10753902
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved note UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved physical properties Km: 3.3 +/- 0.2 microM; for UDP-3-O-acyl-GlcNAc; pH 5.5, 30 C Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Approved physical properties Km: >20000 microM; for UDP-GlcNAc; pH 5.7, 30 C Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Approved physical properties Km: 0.6 +/- 0.3 microM; for UDP-3-O-acyl-GlcNAc; pH 5.7, 1 C Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Approved physical properties Molecular weight: 33.96 +/- 10 kD; by electrospray mass spectroscopy Experimental - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved protein id AAC73207.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Approved subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 8366124
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 3288280
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Direct Assay - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Direct Assay - PubMed ID: 10026271
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004463
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000055 lpxC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001715 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001511 lpxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000962 lpxC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000256 lpxC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000490 lpxC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003164 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003780 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000761 lpxC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003449 lpxC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000951 lpxC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001364 lpxC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005109 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017965 lpxC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003619 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001126 lpxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298209 lpxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003089 lpxC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000801 lpxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000756 lpxC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000099 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006479 lpxC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000091 lpxC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004206 lpxC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009645 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010483 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076178 lpxC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000093 lpxC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000142 lpxC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000106 lpxC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004549 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001395 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009344 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007854 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008536 lpxC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004944 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008667 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007666 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010729 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009889 lpxC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024012 lpxC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009512 lpxC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004784 lpxC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000401 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000140 lpxC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000098 lpxC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000267 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000251 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000242 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000112 lpxC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174298 lpxC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000099 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000102 lpxC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129979 lpxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001526 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000106 lpxC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000278 lpxC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004235 lpxC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000101 lpxC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003142 lpxC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005112 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000054 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004571 lpxC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000074 lpxC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004175 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000758 lpxC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003553 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008435 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004181 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287716 lpxC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003893 lpxC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064126 lpxC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002188 lpxC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002151 lpxC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003938 lpxC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008783 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145144 lpxC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004476 lpxC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004332 lpxC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003012 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000154 lpxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004422 lpxC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000460 lpxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000447 lpxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008389 lpxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004514 lpxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007173 lpxC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004481 lpxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004959 lpxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008570 lpxC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004519 lpxC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005911 lpxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000138 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000137 lpxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000172 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004819 lpxC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005980 lpxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004244 lpxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004388 lpxC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105582 lpxC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081849 lpxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000161 lpxC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091054 lpxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004368 lpxC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007163 lpxC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004440 lpxC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000167 lpxC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267862 lpxC CDS
Person Approved Go view Shigella boydii 227 ADV-0000090 lpxC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005487 lpxC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000137 lpxC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071026 lpxC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086457 lpxC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000092 lpxC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000112 lpxC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002489 VC2396 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000359 lpxC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001853 lpxC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001541 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002096 asmB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000189 lpxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002600 lpxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001627 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243025 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007027 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004225 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005981 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002760 lpxC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117234 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005143 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008567 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003053 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007103 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007712 lpxC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033398 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007968 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000532 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003689 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007532 lpxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007396 lpxC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000736 lpxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000855 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004163 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002445 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000110 lpxC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 101557 to 112474
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000324murCCDSforward100765102240Upstream
ABE-0000326ddlBCDSforward102233103153Upstream
ABE-0000329ftsQCDSforward103155103985Upstream
ABE-0000331ftsACDSforward103982105244Upstream
ABE-0000333ftsZCDSforward105305106456Upstream
ABE-0000336lpxCCDSforward106557107474Matches
ABE-0000340secMCDSforward107705108217Downstream
ABE-0000343secACDSforward108279110984Downstream
ABE-0000346mutTCDSforward111044111433Downstream
ABE-0285327repeat_regionforward111430111629Downstream
ABE-0000351yacGCDScomplement111649111846Downstream
ABE-0000355zapDCDScomplement111856112599Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.