Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000346 (mutT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000346 showshow history
Names
mutT nudA JW0097 ECK0100 b0099
Product
8-oxo-dGTP diphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 111044 111433 390 130
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000058
EnteroFam0000346: Trusted threshold=331.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Apr 2008
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Apr 2008
Automated Process Approved IPR002667 (IPR002667 (DEPRECATED) Isopentenyl-diphosphate delta-isomerase) Apr 2008
Automated Process Approved IPR003561 (IPR003561 Mutator MutT) Apr 2008
Automated Process Approved PF00293 (PF00293 NUDIX domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009265 2'-deoxyribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006281 DNA repair GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003561
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003561
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004452 isopentenyl-diphosphate delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mutT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0097 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0100 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nudA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0099 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 8-oxo-dGTP diphosphatase Published Annotation - EcoCyc Accession Number: EG10626
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000346: Trusted threshold=331.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000058
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003561 Mutator MutT Protein Sequence Similarity - InterPro Domain: IPR003561
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00293 NUDIX domain Protein Sequence Similarity - PFAM Model Name: PF00293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002667 (DEPRECATED) Isopentenyl-diphosphate delta-isomerase Protein Sequence Similarity - InterPro Domain: IPR002667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.1.- Published Annotation - Swiss-Prot Accession Number: P08337 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.15 (metabolism; central intermediary metabolism; 2'-deoxyribonucleotide metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000346 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08337 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08337 Published Annotation - Swiss-Prot Accession Number: P08337 Jan 2005
Automated Process Approved db xref GeneID:944824 Published Annotation - Entrez Gene Database ID: 944824
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786288 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10626 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; 2'-Deoxyribonucleotide metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73210.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006281 DNA repair GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003561
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009265 2'-deoxyribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004452 isopentenyl-diphosphate delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003561
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000058 mutT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001718 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001151 mutT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000980 mutT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001007 mutT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000330 mutT CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129472 mutT CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104312 mutT CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000765 mutT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003445 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000954 mutT CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001367 mutT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005114 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017969 mutT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003615 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001130 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298283 mutT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000835 mutT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000753 mutT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009760 mutT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000102 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006476 mutT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000094 mutT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004203 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009641 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010340 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076181 mutT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009933 mutT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006934 mutT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000109 mutT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004552 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001392 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009348 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007857 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008539 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010976 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004947 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008671 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007669 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009864 mutT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009893 mutT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024015 mutT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009515 mutT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004787 mutT CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000143 mutT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000101 mutT CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000102 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000105 mutT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129982 mutT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001529 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000109 mutT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000282 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000104 mutT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003145 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005117 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008438 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064122 mutT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002185 mutT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002148 mutT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003934 mutT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008778 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145135 mutT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004335 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003005 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000157 mutT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004425 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000470 mutT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000457 mutT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008385 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004517 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007170 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004962 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008573 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004522 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005908 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000141 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000140 mutT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000175 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004822 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005977 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004247 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004391 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105587 mutT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081852 mutT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000164 mutT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091059 mutT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004365 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007160 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004443 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000171 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263961 mutT CDS
Person Uncurated Go view Shigella boydii 227 ADV-0000093 mutT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005491 mutT CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000140 mutT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071029 mutT CDS
Person Approved Go view Shigella flexneri 301 ABT-0086460 mutT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000095 mutT CDS
Person Approved Go view Shigella sonnei 046 ADD-0000115 mutT CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001722 mutT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002485 VC2392 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001866 mutT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001537 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002105 mutT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000185 mutT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002916 mutT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001631 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243020 mutT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007023 mutT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004220 mutT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005986 mutT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002756 mutT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117241 mutT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005138 mutT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008563 mutT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001784 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007098 mutT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007708 mutT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033394 mutT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007972 mutT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000537 mutT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003684 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007528 mutT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007392 mutT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000740 mutT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000859 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004159 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002457 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000107 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 106044 to 116433
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000333ftsZCDSforward105305106456Upstream
ABE-0000336lpxCCDSforward106557107474Upstream
ABE-0000340secMCDSforward107705108217Upstream
ABE-0000343secACDSforward108279110984Upstream
ABE-0000346mutTCDSforward111044111433Matches
ABE-0285327repeat_regionforward111430111629Overlaps Downstream
ABE-0000351yacGCDScomplement111649111846Downstream
ABE-0000355zapDCDScomplement111856112599Downstream
ABE-0000357coaECDScomplement112599113219Downstream
ABE-0285817yacMCDSforward113244113288Downstream
ABE-0000362guaCCDSforward113444114487Downstream
ABE-0000366hofCCDScomplement114522115724Downstream
ABE-0000370hofBCDScomplement115714117099Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.