Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000362 (guaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000362 showshow history
Names
guaC JW0101 ECK0104 b0104
Product
GMP reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 113444 114487 1044 348
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000062
EnteroFam0000362: Trusted threshold=985; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001093 (IPR001093 IMP dehydrogenase/GMP reductase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR005993 (IPR005993 GMP reductase) Apr 2008
Automated Process Approved PF00478 (PF00478 IMP dehydrogenase / GMP reductase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005993
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001093
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:1902560 GMP reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005993
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003920 GMP reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005993
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001093
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name guaC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0104 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0101 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0104 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GMP reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name GMP reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000362: Trusted threshold=985; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000062
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00478 IMP dehydrogenase / GMP reductase domain Protein Sequence Similarity - PFAM Model Name: PF00478
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001093 IMP dehydrogenase/GMP reductase Protein Sequence Similarity - InterPro Domain: IPR001093
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005993 GMP reductase Protein Sequence Similarity - InterPro Domain: IPR005993
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.7.1.7 Published Annotation - Swiss-Prot Accession Number: P60560 Feb 2006
Person Uncurated MultiFun 1.5.2.3 (metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10422 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60560 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948986 Published Annotation - Entrez Gene Database ID: 948986
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P60560 Published Annotation - Swiss-Prot Accession Number: P60560 Jan 2006
Automated Process Approved db xref GI:1786293 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73215.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005993
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001093
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:1902560 GMP reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005993
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001093
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003920 GMP reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005993
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000062 guaC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001722 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001433 guaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001786 guaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001483 guaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001825 guaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003172 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003789 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129474 guaC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104914 guaC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104314 guaC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000769 guaC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003441 guaC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000959 guaC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001371 guaC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005118 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017973 guaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003611 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001134 guaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298294 guaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003065 guaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000839 guaC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000749 guaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009671 guaC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000106 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006472 guaC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000097 guaC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004199 guaC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009637 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010184 guaC CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006547 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076189 guaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000100 guaC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000152 guaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009937 guaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006930 guaC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000113 guaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004557 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001388 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009352 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007861 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008543 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010629 guaC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004951 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009379 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008675 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009860 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010430 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009127 guaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009897 guaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024020 guaC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009519 guaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004791 guaC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000408 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000147 guaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000105 guaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000260 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000244 guaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000235 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000122 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174305 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000106 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000109 guaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129987 guaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001534 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000113 guaC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000286 guaC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004227 guaC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000108 guaC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003149 guaC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005121 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000061 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004578 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000081 guaC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004168 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000765 guaC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003546 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008442 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004188 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287723 guaC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003902 guaC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064118 guaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002184 guaC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002147 guaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003216 guaC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008774 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004341 guaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002999 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000163 guaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004431 guaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000488 guaC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000474 guaC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008379 guaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004522 guaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007165 guaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004489 guaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004968 guaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008579 guaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004527 guaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005903 guaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000147 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000146 guaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000180 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004827 guaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005971 guaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004252 guaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004396 guaC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105602 guaC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081858 guaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000170 guaC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091071 guaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004358 guaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007153 guaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004448 guaC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000175 guaC CDS
Person Approved Go view Shigella boydii 227 ADV-0000098 guaC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005495 guaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005975 guaC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000145 guaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071035 guaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086465 guaC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000099 guaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000120 guaC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003086 VCA0197 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001533 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002116 guaC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000181 guaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002912 guaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001635 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234767 guaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005150 guaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003510 guaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008224 guaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003929 guaC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126893 guaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006367 guaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005854 guaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003356 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005843 guaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004195 guaC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030394 guaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006597 guaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000812 guaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003508 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004923 guaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007388 guaC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000745 guaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000866 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004152 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002471 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000103 guaC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 108444 to 119487
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000343secACDSforward108279110984Upstream
ABE-0000346mutTCDSforward111044111433Upstream
ABE-0285327repeat_regionforward111430111629Upstream
ABE-0000351yacGCDScomplement111649111846Upstream
ABE-0000355zapDCDScomplement111856112599Upstream
ABE-0000357coaECDScomplement112599113219Upstream
ABE-0285817yacMCDSforward113244113288Upstream
ABE-0000362guaCCDSforward113444114487Matches
ABE-0000366hofCCDScomplement114522115724Downstream
ABE-0000370hofBCDScomplement115714117099Downstream
ABE-0000372ppdDCDScomplement117109117549Downstream
ABE-0000374nadCCDScomplement117752118645Downstream
ABE-0000380ampDCDSforward118733119284Downstream
ABE-0000382ampECDSforward119281120135Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.