Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000380 (ampD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000380 showshow history
Names
ampD JW0106 ECK0109 b0110
Product
1,6-anhydro-N-acetylmuramoyl-L-alanine amidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 118733 119284 552 184
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000066
EnteroFam0000380: Trusted threshold=466.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002502 (IPR002502 N-acetylmuramoyl-L-alanine amidase domain) Apr 2008
Automated Process Approved IPR036505 (IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily) Jul 2018
Automated Process Approved PF01510 (PF01510 N-acetylmuramoyl-L-alanine amidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ampD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0109 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0106 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0110 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 1,6-anhydro-N-acetylmuramoyl-L-alanine amidase Published Annotation - EcoCyc Accession Number: EG10041
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Automated Process Approved alternate product name 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name N-acetyl-anhydromuramyl-L-alanine amidase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000380: Trusted threshold=466.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000066
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002502 N-acetylmuramoyl-L-alanine amidase domain Protein Sequence Similarity - InterPro Domain: IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01510 N-acetylmuramoyl-L-alanine amidase Protein Sequence Similarity - PFAM Model Name: PF01510
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036505
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved EC number 3.5.1.28 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948877 Published Annotation - Entrez Gene Database ID: 948877
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13016 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10041 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13016 Published Annotation - Swiss-Prot Accession Number: P13016 Jan 2005
Person Approved function regulator; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note regulates ampC; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73221.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002502
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000066 ampD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001727 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001179 ampD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001413 ampD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003388 ampD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001240 ampD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003178 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003795 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000774 ampD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003436 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000964 ampD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001376 ampD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005125 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046751 ampD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003605 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001139 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298314 ampD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003060 ampD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000846 ampD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000744 ampD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009647 ampD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000111 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006467 ampD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000102 ampD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004194 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009632 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010189 ampD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006542 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076194 ampD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000105 ampD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000157 ampD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009942 ampD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006925 ampD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000118 ampD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004562 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001383 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009357 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007866 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008548 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010624 ampD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004956 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009384 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008680 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007679 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009855 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010425 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009132 ampD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009902 ampD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024026 ampD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009525 ampD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004796 ampD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000413 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000152 ampD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000110 ampD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000254 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000238 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000229 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000128 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174310 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000111 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000114 ampD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129993 ampD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001539 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000119 ampD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000291 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004221 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000113 ampD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003154 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005128 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000066 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004583 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000086 ampD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004163 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000770 ampD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003541 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008447 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004193 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287730 ampD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003907 ampD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064112 ampD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003027 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0004203 ampD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003209 ampD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008767 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000972 ampD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004346 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002994 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000168 ampD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004436 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000507 ampD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000493 ampD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008374 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004527 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007160 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004494 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004973 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008584 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004532 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005898 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000152 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000151 ampD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000186 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004832 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005966 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004257 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004401 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105617 ampD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081863 ampD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000176 ampD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091086 ampD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004353 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007148 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004453 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000180 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263972 ampD CDS
Person Approved Go view Shigella boydii 227 ADV-0000106 ampD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005501 ampD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005983 ampD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000151 ampD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071041 ampD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086470 ampD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000104 ampD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000126 ampD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002514 VC2421 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001880 ampD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001528 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002134 ampD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000176 ampD CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0002907 ampD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001640 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234777 ampD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005145 ampD CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003505 ampD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008219 ampD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003934 ampD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126874 ampD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006372 ampD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005860 ampD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003352 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005848 ampD CDS
Person Approved Go view Yersinia pestis India 195 (biovar Orientalis) BBF-0000751 ampD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004200 ampD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030399 ampD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006602 ampD CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000817 ampD CDS
Person Approved Go view Yersinia pestis Nepal516A (biovar Antiqua) BBD-0000304 ampD CDS
Person Approved Go view Yersinia pestis PEXU2 (biovar Orientalis) BBG-0002190 ampD CDS
Person Approved Go view Yersinia pestis Pestoides A (biovar Pestoides) BBH-0004037 ampD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003513 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004918 ampD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007383 ampD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000751 ampD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000872 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004147 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002493 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000098 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 113733 to 124284
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000362guaCCDSforward113444114487Upstream
ABE-0000366hofCCDScomplement114522115724Upstream
ABE-0000370hofBCDScomplement115714117099Upstream
ABE-0000372ppdDCDScomplement117109117549Upstream
ABE-0000374nadCCDScomplement117752118645Upstream
ABE-0000380ampDCDSforward118733119284Matches
ABE-0000382ampECDSforward119281120135Overlaps Downstream
ABE-0000384aroPCDScomplement120178121551Downstream
ABE-0000394pdhRCDSforward122092122856Downstream
ABE-0000397aceECDSforward123017125680Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.