Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000404 (lpd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000404 showshow history
Names
lpd dhl lpdA JW0112 ECK0115 b0116
Product
lipoamide dehydrogenase E3 component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 127912 129336 1425 475
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000071
EnteroFam0000404: Trusted threshold=1428.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Apr 2008
Automated Process Approved IPR001327 (IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain) Apr 2008
Automated Process Approved IPR004099 (IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain) Apr 2008
Automated Process Approved IPR012999 (IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site) Apr 2008
Automated Process Approved IPR006258 (IPR006258 Dihydrolipoamide dehydrogenase) Apr 2008
Automated Process Approved IPR000815 (IPR000815 (DEPRECATED) Mercuric reductase) Apr 2008
Automated Process Approved IPR001100 (IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I) Apr 2008
Automated Process Approved IPR023753 (IPR023753 FAD/NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR016156 (IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02852 (PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain) Jul 2018
Automated Process Approved PF07992 (PF07992 Pyridine nucleotide-disulphide oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004099, IPR023753, IPR006258, IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006086 acetyl-CoA biosynthetic process from pyruvate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004148 dihydrolipoyl dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpd Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0115 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dhl Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym lpdA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW0112 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0116 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product lipoamide dehydrogenase E3 component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000404: Trusted threshold=1428.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000071
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023753 FAD/NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR023753
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF02852
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07992 Pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF07992
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000815 (DEPRECATED) Mercuric reductase Protein Sequence Similarity - InterPro Domain: IPR000815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Protein Sequence Similarity - InterPro Domain: IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Protein Sequence Similarity - InterPro Domain: IPR012999
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006258 Dihydrolipoamide dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.8.1.4 Published Annotation - Swiss-Prot Accession Number: P0A9P0 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.3 (metabolism; energy metabolism, carbon; pyruvate dehydrogenase) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.21 (metabolism; central intermediary metabolism; glyoxylate degradation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9P0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9P0 Published Annotation - Swiss-Prot Accession Number: P0A9P0 Jan 2006
Automated Process Approved db xref GeneID:944854 Published Annotation - Entrez Gene Database ID: 944854
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000404 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786307 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10543 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate; GO_process: GO:0006099 - tricarboxylic acid cycle; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0009436 - glyoxylate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73227.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004099, IPR023753, IPR006258, IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006086 acetyl-CoA biosynthetic process from pyruvate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004148 dihydrolipoyl dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000071 lpd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001731 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000091 lpd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000161 lpd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000471 lpd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000137 lpd CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003184 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003801 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129477 lpdA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104917 lpdA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104317 lpdA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000784 lpdA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003430 lpdA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000973 lpdA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001385 lpdA CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0005131 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019239 lpd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003599 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001148 lpdA CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0298354 lpdA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003044 lpdA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000856 lpdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000738 lpdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009549 lpdA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000124 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006461 lpdA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000112 lpd CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004182 lpdA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009626 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007832 lpdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006536 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076209 lpd CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000111 lpdA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000163 lpdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009949 lpdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006919 lpdA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000124 lpd CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004568 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001377 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009365 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007872 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008555 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010699 lpdA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004963 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009391 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008689 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007687 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009848 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010418 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009139 lpdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009908 lpdA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024032 lpd CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009536 lpdA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004802 lpdA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000424 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000158 lpd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000116 lpd CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000247 lpdA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000231 lpdA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000222 lpdA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000143 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000117 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000127 lpdA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0129999 lpd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001545 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000130 lpdA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000297 lpdA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004213 lpdA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000121 lpdA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003162 lpdA CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005135 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000074 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0004591 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0000094 lpdA CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0004155 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0000778 lpdA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003533 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0008455 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0004201 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287738 lpd CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0003915 lpdA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064104 lpd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002180 lpdA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002144 lpdA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003203 lpd CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0008761 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145088 lpdA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002245 lpdA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004356 lpdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002984 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000176 lpd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004445 lpdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000538 lpdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000524 lpdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008365 lpdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004535 lpdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007151 lpdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004503 lpdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004982 lpdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008593 lpdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004540 lpdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005890 lpdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000160 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000159 lpdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000196 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004841 lpdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005957 lpdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004267 lpdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004411 lpdA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105639 lpd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081871 lpd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000186 lpdA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091120 lpd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004345 lpdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007139 lpdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004461 lpdA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001705 lpdA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263977 lpdA CDS
Person Approved Go view Shigella boydii 227 ADV-0000112 lpdA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005507 lpdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005990 lpdA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000157 lpdA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071048 lpd CDS
Person Approved Go view Shigella flexneri 301 ABT-0086476 lpdA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000110 lpdA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000132 lpd CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002505 VC2412 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000491 lpd CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001892 lpd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001522 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002175 lpd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000168 lpd_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002901 lpd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001647 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234804 lpd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005137 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003499 lpd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008212 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003940 lpdA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126839 lpd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006379 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005868 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005855 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004207 lpdA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030405 lpd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006610 lpdA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000823 lpd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003520 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004911 lpdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007375 lpdA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000757 lpd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000879 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004140 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002533 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000089 lpdA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 122912 to 134336
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000397aceECDSforward123017125680Upstream
ABE-0000400aceFCDSforward125695127587Upstream
ABE-0000404lpdCDSforward127912129336Matches
ABE-0285328repeat_regionforward129347129361Downstream
ABE-0000406yacHCDScomplement129407131260Downstream
ABE-0000411acnBCDSforward131615134212Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.