Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000416 (speD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000416 showshow history
Names
speD JW0116 ECK0119 b0120
Product
S-adenosylmethionine decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 134788 135582 795 265
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000074
EnteroFam0000416: Trusted threshold=790.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003826 (IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic) Apr 2008
Automated Process Approved IPR001985 (IPR001985 S-adenosylmethionine decarboxylase) Apr 2008
Automated Process Approved IPR009165 (IPR009165 S-adenosylmethionine decarboxylase, bacterial) Apr 2008
Automated Process Approved IPR016067 (IPR016067 S-adenosylmethionine decarboxylase, core) Jul 2018
Automated Process Approved PF02675 (PF02675 S-adenosylmethionine decarboxylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008295 spermidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006597 spermine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004014 adenosylmethionine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name speD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0119 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0116 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0120 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product S-adenosylmethionine decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name S-adenosylmethionine decarboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name S-adenosylmethionine decarboxylase, proenzyme Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000416: Trusted threshold=790.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000074
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001985 S-adenosylmethionine decarboxylase Protein Sequence Similarity - InterPro Domain: IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009165 S-adenosylmethionine decarboxylase, bacterial Protein Sequence Similarity - InterPro Domain: IPR009165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016067 S-adenosylmethionine decarboxylase, core Protein Sequence Similarity - InterPro Domain: IPR016067
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic Protein Sequence Similarity - InterPro Domain: IPR003826
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02675 S-adenosylmethionine decarboxylase Protein Sequence Similarity - PFAM Model Name: PF02675
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.1.50 Published Annotation - Swiss-Prot Accession Number: P0A7F6 Feb 2006
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7F6 Published Annotation - Swiss-Prot Accession Number: P0A7F6 Jan 2006
Automated Process Approved db xref GeneID:947719 Published Annotation - Entrez Gene Database ID: 947719
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786311 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7F6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000416 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Polyamine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006596 - polyamine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73231.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008295 spermidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006597 spermine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004014 adenosylmethionine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000074 speD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001799 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001688 speD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002060 speD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001929 speD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002142 speD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002157 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000999 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129478 speD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104318 speD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000984 speD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005589 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020536 speD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003218 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001158 speD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298498 speD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003008 speD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000870 speD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000733 speD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008384 speD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000128 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006457 speD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000116 speD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004178 speD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009621 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007836 speD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006531 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076213 speD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000115 speD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000167 speD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009953 speD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006915 speD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000128 speD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004572 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001373 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009369 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007876 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008559 speD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004967 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009395 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008694 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007692 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009844 speD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010297 speD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009143 speD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024036 speD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007936 speD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004806 speD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000428 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000162 speD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000120 speD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000242 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000226 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000363 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000147 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174327 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000121 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000131 speD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130003 speD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001549 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000134 speD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000303 speD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000127 speD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003167 speD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007739 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000083 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004602 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000104 speD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004144 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000788 speD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003523 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008478 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004217 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287755 speD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003933 speD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063629 speD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001934 speD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002044 speD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008242 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138674 speD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000602 speD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004377 speD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002973 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000188 speD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004458 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000572 speD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000557 speD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008350 speD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004555 speD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007131 speD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004514 speD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005001 speD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008613 speD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004554 speD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005877 speD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000170 speD CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000169 speD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000208 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004853 speD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005944 speD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004278 speD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004422 speD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105656 speD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081881 speD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000198 speD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091152 speD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004329 speD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007126 speD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004474 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001708 speD CDS
Person Approved Go view Shigella boydii 227 ADV-0000116 speD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005511 speD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005997 speD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000031 speD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071052 speD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086479 speD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000114 speD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000136 speD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002246 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002199 speD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000160 speD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002895 speD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000857 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234821 speD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005130 speD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003493 speD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008206 speD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003945 speD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126818 speD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006385 speD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005874 speD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005861 speD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004213 speD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030411 speD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006616 speD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000829 speD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003526 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004906 speD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007370 speD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000761 speD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000885 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004133 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002552 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000083 speD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 129788 to 140582
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000406yacHCDScomplement129407131260Downstream
ABE-0000411acnBCDSforward131615134212Downstream
ABE-0000414yacLCDSforward134388134750Downstream
ABE-0000416speDCDScomplement134788135582Matches
ABE-0000418speECDScomplement135598136464Upstream
ABE-0000423yacCCDScomplement136570136917Upstream
ABE-0000430cueOCDSforward137083138633Upstream
ABE-0285329repeat_regionforward138699138796Upstream
ABE-0000433gcdCDScomplement138835141225Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.