Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000418 (speE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000418 showshow history
Names
speE JW0117 ECK0120 b0121
Product
spermidine synthase (putrescine aminopropyltransferase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 135598 136464 867 289
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000075
EnteroFam0000418: Trusted threshold=807.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001045 (IPR001045 Spermidine/spermine synthases) Apr 2008
Automated Process Approved IPR035246 (IPR035246 Spermidine synthase, tetramerisation domain) Jul 2018
Automated Process Approved IPR029063 (IPR029063 S-adenosyl-L-methionine-dependent methyltransferase) Jul 2018
Automated Process Approved PF17284 (PF17284 Spermidine synthase tetramerisation domain) Jul 2018
Automated Process Approved PF01564 (PF01564 Spermine/spermidine synthase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name speE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0120 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0117 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0121 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product spermidine synthase (putrescine aminopropyltransferase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name spermidine synthase (putrescine aminopropyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name spermidine synthase = putrescine aminopropyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000418: Trusted threshold=807.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000075
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001045 Spermidine/spermine synthases Protein Sequence Similarity - InterPro Domain: IPR001045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF17284 Spermidine synthase tetramerisation domain Protein Sequence Similarity - PFAM Model Name: PF17284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01564 Spermine/spermidine synthase domain Protein Sequence Similarity - PFAM Model Name: PF01564
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Protein Sequence Similarity - InterPro Domain: IPR029063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035246 Spermidine synthase, tetramerisation domain Protein Sequence Similarity - InterPro Domain: IPR035246
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.5.1.16 Published Annotation - Swiss-Prot Accession Number: P09158 Feb 2006
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09158 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000418 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786312 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947726 Published Annotation - Entrez Gene Database ID: 947726
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P09158 Published Annotation - Swiss-Prot Accession Number: P09158 Jan 2005
Automated Process Approved db xref EcoGene:EG10963 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Polyamine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note spermidine synthase = putrescine aminopropyltransferase; GO_process: GO:0006596 - polyamine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73232.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000075 speE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001798 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001441 speE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002003 speE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001930 speE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002139 speE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002158 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000998 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129479 speE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104319 speE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000985 speE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005590 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014528 speE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003217 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001159 speE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298500 speE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003007 speE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000871 speE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000732 speE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008385 speE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000129 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006456 speE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000117 speE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004177 speE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009620 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007837 speE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006530 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076214 speE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000116 speE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000168 speE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009954 speE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006914 speE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000129 speE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004573 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001372 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009370 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007877 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008560 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010565 speE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004968 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009396 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008695 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007693 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009843 speE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010296 speE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009144 speE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009494 speE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024037 speE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007935 speE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004807 speE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000429 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000163 speE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000121 speE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000241 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000225 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000362 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000148 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174328 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000122 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000132 speE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130004 speE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001550 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000135 speE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000304 speE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000128 speE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003168 speE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007738 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000084 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004603 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000105 speE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004143 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000789 speE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003522 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008479 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004218 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287756 speE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003934 speE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063628 speE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001935 speE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002043 speE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008241 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138677 speE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002093 speE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004378 speE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002972 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000189 speE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004459 speE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000574 speE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000559 speE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008349 speE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004556 speE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007130 speE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004515 speE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005002 speE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008614 speE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004555 speE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005876 speE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000171 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000170 speE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000209 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004854 speE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005943 speE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004279 speE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004423 speE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105657 speE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081882 speE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000199 speE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091155 speE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004328 speE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007125 speE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004475 speE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001709 speE CDS
Person Approved Go view Shigella boydii 227 ADV-0000117 speE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005512 speE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005998 speE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000032 speE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071053 speE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086480 speE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000115 speE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000137 speE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002245 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002200 speE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000159 speE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002894 speE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000858 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234822 speE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005129 speE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003492 speE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008205 speE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003946 speE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126815 speE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006386 speE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005875 speE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002687 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005862 speE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004214 speE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030412 speE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006617 speE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000830 speE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003527 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004905 speE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007369 speE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000762 speE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000886 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004132 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002554 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000082 speE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 130598 to 141464
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000406yacHCDScomplement129407131260Downstream
ABE-0000411acnBCDSforward131615134212Downstream
ABE-0000414yacLCDSforward134388134750Downstream
ABE-0000416speDCDScomplement134788135582Downstream
ABE-0000418speECDScomplement135598136464Matches
ABE-0000423yacCCDScomplement136570136917Upstream
ABE-0000430cueOCDSforward137083138633Upstream
ABE-0285329repeat_regionforward138699138796Upstream
ABE-0000433gcdCDScomplement138835141225Upstream
ABE-0000440hptCDSforward141431141967Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.