Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000442 (can) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000442 showshow history
Names
can cynT2 yadF JW0122 ECK0125 b0126
Product
carbonic anhydrase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 142008 142670 663 221
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000078
EnteroFam0000442: Trusted threshold=585; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001765 (IPR001765 Carbonic anhydrase) Apr 2008
Automated Process Approved IPR036874 (IPR036874 Carbonic anhydrase superfamily) Jul 2018
Automated Process Approved PF00484 (PF00484 Carbonic anhydrase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015976 carbon utilization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015976 carbon utilization GO Traceable Author Statement - PubMed ID: 8673298
Reference: Escherichia coli K-12 W3110 		Nov 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004089 carbonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0004089 carbonate dehydratase activity GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Person Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Person Uncurated GO molecular function GO:0042803 protein homodimerization activity GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name can Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yadF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym cynT2 Published Annotation - PubMed ID: 8673298
Reference: Escherichia coli K-12 W3110 		Nov 2006
Person Approved synonym JW0122 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0125 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0126 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product carbonic anhydrase Experimental - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Protein Family
Person Approved EnteroFam EnteroFam0000442: Trusted threshold=585; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000078
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036874 Carbonic anhydrase superfamily Protein Sequence Similarity - InterPro Domain: IPR036874
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001765 Carbonic anhydrase Protein Sequence Similarity - InterPro Domain: IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00484 Carbonic anhydrase Protein Sequence Similarity - PFAM Model Name: PF00484
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.1.1 Experimental - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Jan 2007
Person Uncurated MultiFun 1.7 (metabolism; central intermediary metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment active at pH 8.4 and pH 9.1, inactive at pH 7.5 Experimental - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P61517 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12319 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000442 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P61517 Published Annotation - Swiss-Prot Accession Number: P61517 Jan 2006
Automated Process Approved db xref GeneID:944832 Published Annotation - Entrez Gene Database ID: 944832
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function catalyzes the reversible hydration of carbon dioxide Published Annotation - PubMed ID: 8673298
Reference: Escherichia coli K-12 W3110 		Nov 2006
Automated Process Approved note putative carbonic anhdrase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated physical properties Molecular Weight: 25.0985 kD; by analytical size-exclusion chromatography Experimental - PubMed ID: 10957638
Reference: Escherichia coli K-12 		Nov 2006
Automated Process Approved protein id AAC73237.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1I6O wild-type; fragments:2-215 (monomer A),3-215 (monomer B), co-crystallized with Zn++, selenomethionine:2.20 A; X-ray diffraction Experimental - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Person Uncurated structure PDB:1I6P wild-type; fragment:2-215, co-crystallized with Zn++:2.0 A; X-ray diffraction Experimental - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015976 carbon utilization GO Traceable Author Statement - PubMed ID: 8673298
Reference: Escherichia coli K-12 W3110 		Nov 2006
Automated Process Approved GO biological process GO:0015976 carbon utilization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO molecular function GO:0004089 carbonate dehydratase activity GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Person Uncurated GO molecular function GO:0042803 protein homodimerization activity GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004089 carbonate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Direct Assay - PubMed ID: 11316870
Reference: Escherichia coli K-12 		Nov 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000078 can CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000400 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001061 can CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001087 can CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000794 can CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001104 can CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002163 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000994 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000796 can CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003421 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000991 can CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001395 can CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005600 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020670 can CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003210 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001164 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298521 can CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002999 yadF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000892 yadF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000727 can CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008390 can CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000135 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006451 can CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000122 yadF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004172 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009612 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007842 can CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006522 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076219 can CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000122 can CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000173 yadF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006909 can CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000134 can CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004578 can CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001366 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009376 can CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007883 can CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008566 can CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010571 can CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004974 can CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009402 can CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008702 can CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007699 can CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009837 can CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010290 can CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009150 can CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009500 can CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024042 can CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007930 can CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004812 can CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000434 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000168 can CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000126 can CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000236 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000220 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000357 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000153 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174333 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000127 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000137 can CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130009 can CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001556 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000140 yadF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000318 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004202 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000135 yadF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003173 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007727 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000089 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004608 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000110 can CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004138 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000794 can CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003517 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004224 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287766 can CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003939 yadF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063622 can CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002852 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0004138 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004090 can CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008234 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138730 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001021 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004383 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002967 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000194 can CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004464 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000598 yadF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000581 yadF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008344 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004561 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007125 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004520 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005007 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008619 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004560 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005871 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000176 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000175 can CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000214 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004859 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005938 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004284 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004428 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105676 can CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081887 can CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000204 yadF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091170 can CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004323 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007120 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004480 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001713 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266061 CDS
Person Approved Go view Shigella boydii 227 ADV-0000122 can CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005517 can CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006003 can CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000040 yadF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071058 can CDS
Person Approved Go view Shigella flexneri 301 ABT-0086485 can CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000120 yadF CDS
Person Approved Go view Shigella sonnei 046 ADD-0000142 can CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000643 VC0586 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001545 yadF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002241 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002212 yadF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000155 yadF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002890 can CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000863 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234828 can CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005124 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003486 can CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008201 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003950 can CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126805 can CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006390 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005879 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005866 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004218 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030416 can CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006621 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000836 can CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003533 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004901 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007365 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000766 can CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000892 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004126 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002573 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000077 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 137008 to 147670
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000430cueOCDSforward137083138633Downstream
ABE-0285329repeat_regionforward138699138796Downstream
ABE-0000433gcdCDScomplement138835141225Downstream
ABE-0000440hptCDSforward141431141967Downstream
ABE-0285330repeat_regionforward141978141998Downstream
ABE-0000442canCDScomplement142008142670Matches
ABE-0000447yadGCDSforward142779143705Upstream
ABE-0000450yadHCDSforward143702144472Upstream
ABE-0000453yadICDSforward144577145017Upstream
ABE-0000457yadECDSforward145081146310Upstream
ABE-0000459panDCDScomplement146314146694Upstream
ABE-0000463rpnCCDSforward146968147870Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.