Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000459 (panD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000459 showshow history
Names
panD JW0127 ECK0130 b0131
Product
aspartate 1-decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 146314 146694 381 127
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000081
EnteroFam0000459: Trusted threshold=354.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR003190 (IPR003190 Aspartate decarboxylase) Apr 2008
Automated Process Approved PF02261 (PF02261 Aspartate decarboxylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006523 alanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004068 aspartate 1-decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name panD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0127 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0130 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0131 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aspartate 1-decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name aspartate 1-decarboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000459: Trusted threshold=354.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000081
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003190 Aspartate decarboxylase Protein Sequence Similarity - InterPro Domain: IPR003190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02261 Aspartate decarboxylase Protein Sequence Similarity - PFAM Model Name: PF02261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.1.11 Published Annotation - Swiss-Prot Accession Number: P0A790 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.5 (metabolism; building block biosynthesis; cofactor, small molecule carrier; Coenzyme A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A790 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A790 Published Annotation - Swiss-Prot Accession Number: P0A790 Jan 2006
Automated Process Approved db xref ASAP:ABE-0000459 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945686 Published Annotation - Entrez Gene Database ID: 945686
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786323 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11747 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pantothenate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015937 - coenzyme A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73242.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006523 alanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004068 aspartate 1-decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000081 panD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000397 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001275 panD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001545 panD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000989 panD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001636 panD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002166 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000991 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000801 panD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003416 panD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000996 panD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001400 panD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005603 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015446 panD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003207 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001176 panD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298532 panD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002995 panD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000895 panD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000722 panD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008395 panD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000140 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006446 panD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000127 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004167 panD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009606 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007847 panD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006517 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076224 panD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000127 panD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000178 panD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005778 panD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006904 panD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000139 panD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004583 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001361 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009381 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007888 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008571 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010576 panD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004979 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009407 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008707 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007704 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009832 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010285 panD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009155 panD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009505 panD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024047 panD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007925 panD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004817 panD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000439 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000173 panD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000131 panD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000231 panD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000215 panD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000352 panD CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000158 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174338 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000132 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000142 panD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130014 panD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001561 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000145 panD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000321 panD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004188 panD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000140 panD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003178 panD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007724 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000093 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004613 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000113 panD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004135 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000797 panD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003514 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008486 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004229 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287769 panD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003943 panD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063618 panD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001937 panD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000856 panD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004087 panD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008231 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138739 panD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004394 panD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002962 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000203 panD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004474 panD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000631 panD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000612 panD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008327 panD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004578 panD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007108 panD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004531 panD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005024 panD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008636 panD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004570 panD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005861 panD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000188 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000187 panD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000226 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004869 panD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005927 panD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004294 panD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004438 panD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105689 panD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081892 panD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000214 panD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091195 panD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004307 panD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007110 panD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004490 panD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001717 panD CDS
Person Approved Go view Shigella boydii 227 ADV-0000127 panD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005522 panD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006008 panD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000046 panD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071063 panD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086490 panD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000124 panD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000147 panD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002237 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002226 panD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000151 panD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000447 panD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000867 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234838 panD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005119 panD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003480 panD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008196 panD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003954 panD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126790 panD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006395 panD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005884 panD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002834 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005871 panD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004223 panD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030421 panD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006626 panD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000842 panD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003539 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004894 panD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007360 panD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000770 panD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000897 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004121 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002600 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000072 panD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23646mutantTn5 InsertionRequest the StrainABE-0000459panDpanD::Tn5KAN-I-SceI at position 234 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 141314 to 151694
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000440hptCDSforward141431141967Downstream
ABE-0285330repeat_regionforward141978141998Downstream
ABE-0000442canCDScomplement142008142670Downstream
ABE-0000447yadGCDSforward142779143705Downstream
ABE-0000450yadHCDSforward143702144472Downstream
ABE-0000453yadICDSforward144577145017Downstream
ABE-0000457yadECDSforward145081146310Downstream
ABE-0000459panDCDScomplement146314146694Matches
ABE-0000463rpnCCDSforward146968147870Upstream
ABE-0000465panCCDScomplement147944148795Upstream
ABE-0000467panBCDScomplement148807149601Upstream
ABE-0000470yadCCDScomplement149715150953Upstream
ABE-0000472yadKCDScomplement151003151599Upstream
ABE-0000475yadLCDScomplement151626152231Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.