Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000465 (panC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000465 showshow history
Names
panC JW0129 ECK0132 b0133
Product
pantothenate synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 147944 148795 852 284
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000082
EnteroFam0000465: Trusted threshold=734; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003721 (IPR003721 Pantoate-beta-alanine ligase) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR004821 (IPR004821 Cytidyltransferase-like domain) Apr 2008
Automated Process Approved PF02569 (PF02569 Pantoate-beta-alanine ligase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0015940 pantothenate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003721
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0004592 pantoate-beta-alanine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003721
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name panC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK0132 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0129 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0133 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pantothenate synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name pantothenate synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000465: Trusted threshold=734; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000082
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF02569 Pantoate-beta-alanine ligase Protein Sequence Similarity - PFAM Model Name: PF02569
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004821 Cytidyltransferase-like domain Protein Sequence Similarity - InterPro Domain: IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003721 Pantoate-beta-alanine ligase Protein Sequence Similarity - InterPro Domain: IPR003721
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 6.3.2.1 Published Annotation - Swiss-Prot Accession Number: P31663 Feb 2006
Person Uncurated MultiFun 1.5.3.5 (metabolism; building block biosynthesis; cofactor, small molecule carrier; Coenzyme A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P31663 Published Annotation - Swiss-Prot Accession Number: P31663 Jan 2005
Automated Process Approved db xref EcoGene:EG11746 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000465 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786325 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31663 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944958 Published Annotation - Entrez Gene Database ID: 944958
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pantothenate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Uncurated molecular interaction Interacts with the product of dnaK ASAP:52:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Person Uncurated molecular interaction Interacts with the product of ushA ASAP:1668:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015937 - coenzyme A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73244.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015940 pantothenate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003721
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0004592 pantoate-beta-alanine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003721
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000082 panC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000396 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000435 panC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000711 panC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001318 panC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000681 panC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002167 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000990 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129466 panC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104306 panC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000802 panC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003415 panC CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000997 panC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001401 panC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005604 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015444 panC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003206 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001177 panC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298534 panC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002994 panC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000896 panC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000719 panC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008398 panC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000143 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006443 panC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000129 panC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004165 panC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009604 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007850 panC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006514 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076228 panC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000130 panC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000181 panC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005781 panC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006901 panC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000141 panC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004586 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001358 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009384 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007891 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008574 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010579 panC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004982 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009410 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008710 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007707 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009829 panC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010282 panC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009158 panC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009508 panC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024050 panC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007922 panC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004819 panC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000442 panC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000175 panC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000133 panC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000227 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000211 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000348 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0000162 panC pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174340 panC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000134 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000145 panC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130016 panC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001564 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000148 panC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000322 panC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004187 panC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000141 panC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003179 panC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007723 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000094 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004614 panC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000114 panC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004134 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000798 panC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003513 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008487 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004230 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287770 panC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003944 panC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063617 panC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001938 panC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000855 panC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004086 panC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008230 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138742 panC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000982 panC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004395 panC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002961 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000204 panC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004475 panC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000634 panC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000615 panC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008326 panC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004579 panC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007107 panC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004532 panC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005025 panC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008637 panC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004571 panC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005860 panC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000189 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000188 panC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000227 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004870 panC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005926 panC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004295 panC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004439 panC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105691 panC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081893 panC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000215 panC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091198 panC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004306 panC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007109 panC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004491 panC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001718 panC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264424 panC CDS
Person Approved Go view Shigella boydii 227 ADV-0000129 panC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005524 panC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006012 panC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000168 panC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071065 panC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086492 panC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000126 panC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000149 panC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000648 VC0591 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000628 panC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001530 panC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002236 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002228 panC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000150 panC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000448 panC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000870 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234839 panC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005118 panC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003479 panC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008195 panC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003955 panC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126788 panC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006396 panC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005885 panC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002835 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005872 panC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004224 panC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030422 panC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006627 panC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000843 panC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003540 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004893 panC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007359 panC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000771 panC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000898 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004120 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002604 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000071 panC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23647mutantTn5 InsertionRequest the StrainABE-0000465panCpanC::Tn5KAN-I-SceI at position 600 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 142944 to 153795
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000447yadGCDSforward142779143705Downstream
ABE-0000450yadHCDSforward143702144472Downstream
ABE-0000453yadICDSforward144577145017Downstream
ABE-0000457yadECDSforward145081146310Downstream
ABE-0000459panDCDScomplement146314146694Downstream
ABE-0000463rpnCCDSforward146968147870Downstream
ABE-0000465panCCDScomplement147944148795Matches
ABE-0000467panBCDScomplement148807149601Upstream
ABE-0000470yadCCDScomplement149715150953Upstream
ABE-0000472yadKCDScomplement151003151599Upstream
ABE-0000475yadLCDScomplement151626152231Upstream
ABE-0000477yadMCDScomplement152243152812Upstream
ABE-0000479htrECDScomplement152829155426Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.