Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000491 (folK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000491 showshow history
Names
folK JW0138 ECK0141 b0142
Product
2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 157253 157732 480 160
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000084
EnteroFam0000491: Trusted threshold=375.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000550 (IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK) Apr 2008
Automated Process Approved IPR035907 (IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily) Jul 2018
Automated Process Approved PF01288 (PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name folK Published Sequence Analysis - PubMed ID: 1325970
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK0141 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0138 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0142 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name 2-amino-4-hydroxy-6-hydroxymethyldihyropteridinepyrophosphokinase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name HPPK Experimental - PubMed ID: 15018613
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Experimental - PubMed ID: 1325970
Reference: Escherichia coli K-12 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0000491: Trusted threshold=375.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000084
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Protein Sequence Similarity - PFAM Model Name: PF01288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Protein Sequence Similarity - InterPro Domain: IPR000550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily Protein Sequence Similarity - InterPro Domain: IPR035907
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.6.3 Published Annotation - Swiss-Prot Accession Number: P26281 Feb 2006
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786335 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P26281 Published Annotation - Swiss-Prot Accession Number: P26281 Jan 2005
Automated Process Approved db xref GeneID:948792 Published Annotation - Entrez Gene Database ID: 948792
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26281 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000491 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11374 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73253.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000084 folK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000394 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000445 folK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000459 folK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000391 folK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000807 folK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002169 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000988 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000804 folK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003413 folK CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000999 folK CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001403 folK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005606 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015441 folK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003204 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001179 folK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298538 folK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002992 folK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000898 folK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000709 folK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008409 folK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000153 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006431 folK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000138 folK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0004155 folK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009588 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007861 folK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006503 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076239 folK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000145 folK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000194 folK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005793 folK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006890 folK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000150 folK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004596 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001349 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009393 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007900 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008583 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009465 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004991 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009419 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008719 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007716 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009820 folK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010273 folK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009167 folK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009517 folK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024059 folK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007913 folK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004827 folK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000451 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000184 folK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000142 folK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000218 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000202 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000339 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000173 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174350 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000143 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000154 folK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130025 folK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001573 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000157 folK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000326 folK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004185 folK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000143 folK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003181 folK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007721 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000096 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004616 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000116 folK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004132 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000800 folK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003511 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008489 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004232 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287772 folK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003946 folK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063615 folK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002850 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0003076 folK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004084 folK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008228 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138747 folK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000984 folK-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004397 folK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002959 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000206 folK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004477 folK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000638 folK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000619 folK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008324 folK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004581 folK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007105 folK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004541 folK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005027 folK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008639 folK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004573 folK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005858 folK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000191 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000190 folK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000238 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004872 folK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005924 folK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004305 folK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004449 folK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105708 folK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081902 folK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000218 folK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091204 folK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004304 folK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007107 folK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004493 folK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001722 folK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264426 folK-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0000141 folK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005531 folK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006022 folK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000173 folK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071071 folK CDS
Person Approved Go view Shigella flexneri 301 ABT-0086496 folK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000131 folK CDS
Person Approved Go view Shigella sonnei 046 ADD-0000167 folK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000650 VC0593 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000427 folK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001528 folK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002234 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002233 folK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000148 folK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000450 folK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000872 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234841 folK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005115 folK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003477 folK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008192 folK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003957 folK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126784 folK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006399 folK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005887 folK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002837 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005875 folK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004226 folK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030424 folK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006629 folK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000845 folK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003542 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004891 folK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007356 folK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000773 folK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000900 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004118 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002615 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000069 folK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 152253 to 162732
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000477yadMCDScomplement152243152812Downstream
ABE-0000479htrECDScomplement152829155426Downstream
ABE-0000482yadVCDScomplement155461156201Downstream
ABE-0000487yadNCDScomplement156299156883Downstream
ABE-0000491folKCDScomplement157253157732Matches
ABE-0000493pcnBCDScomplement157729159126Overlaps Upstream
ABE-0000497gluQCDScomplement159186160112Upstream
ABE-0000499dksACDScomplement160149160604Upstream
ABE-0000503sfsACDScomplement160782161486Upstream
ABE-0000505thpRCDScomplement161501162031Upstream
ABE-0000510hrpBCDSforward162105164534Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.