Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000516 (mrcB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000516 showshow history
Names
mrcB JW0145 ECK0148 ponB pbpF b0149
Product
penicillin-binding protein 1B (PBP1B)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 164730 167264 2535 845
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000091
EnteroFam0000516: Trusted threshold=2192.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Apr 2008
Automated Process Approved IPR011813 (IPR011813 Penicillin-binding protein 1B) Apr 2008
Automated Process Approved IPR028166 (IPR028166 Bifunctional transglycosylase second domain) Jul 2018
Automated Process Approved IPR032730 (IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain) Jul 2018
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF14814 (PF14814 Bifunctional transglycosylase second domain) Jul 2018
Automated Process Approved PF00912 (PF00912 Transglycosylase) Jul 2018
Automated Process Approved PF14812 (PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal) Jul 2018
Automated Process Approved PF00905 (PF00905 Penicillin binding protein transpeptidase domain) Jul 2018
Automated Process Uncurated GT51 (GT51 Glycosyl Transferase Family 51) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mrcB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym pbpF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ponB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0148 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0145 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0149 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product penicillin-binding protein 1B (PBP1B) Published Sequence Analysis - PubMed ID: 3882429
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name peptidoglycan synthetase; penicillin-binding protein 1B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name peptidoglycan transglycosylase/transpeptidase Experimental - PubMed ID: 10564478
Reference: Escherichia coli 		Mar 2008
Protein Family
Person Approved EnteroFam EnteroFam0000516: Trusted threshold=2192.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000091
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR032730
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14814 Bifunctional transglycosylase second domain Protein Sequence Similarity - PFAM Model Name: PF14814
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011813 Penicillin-binding protein 1B Protein Sequence Similarity - InterPro Domain: IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR028166 Bifunctional transglycosylase second domain Protein Sequence Similarity - InterPro Domain: IPR028166
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal Protein Sequence Similarity - PFAM Model Name: PF14812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00912 Transglycosylase Protein Sequence Similarity - PFAM Model Name: PF00912
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GT51 Glycosyl Transferase Family 51 Protein Sequence Similarity - CAZy Model Name: GT51
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00905 Penicillin binding protein transpeptidase domain Protein Sequence Similarity - PFAM Model Name: PF00905
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.4.-.- Published Annotation - Swiss-Prot Accession Number: P02919 Feb 2006
Person Approved EC number 2.4.1.129 Published Annotation - Swiss-Prot Accession Number: P02919 Feb 2006
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.12 (metabolism; central intermediary metabolism; amino sugar conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944843 Published Annotation - Entrez Gene Database ID: 944843
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P02919 Published Annotation - Swiss-Prot Accession Number: P02919 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02919 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000516 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786343 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10605 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function polymerization of peptidoglycan Experimental - PubMed ID: 6989636
Reference: Escherichia coli K-12 		Mar 2008
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note peptidoglycan synthetase; penicillin-binding protein 1B; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0046349 - amino sugar biosynthetic process; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73260.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.59
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000091 mrcB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000388 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000181 mrcB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000187 mrcB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000993 mrcB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000395 mrcB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002176 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000981 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129470 mrcB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104912 mrcB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000811 mrcB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003406 mrcB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001006 mrcB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001410 mrcB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005613 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046521 mrcB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003197 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001187 mrcB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298559 mrcB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002984 mrcB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000904 mrcB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000702 mrcB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008416 mrcB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000160 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006424 mrcB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000146 mrcB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004148 mrcB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009581 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007869 mrcB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006496 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076247 mrcB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000153 mrcB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000201 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005800 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006883 mrcB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000157 mrcB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004603 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001342 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009400 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007907 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008590 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009472 mrcB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0004998 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009558 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008726 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007723 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009813 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009886 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010009 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009524 mrcB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024066 mrcB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007906 mrcB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004834 mrcB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000458 mrcB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000190 mrcB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000149 mrcB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000210 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000194 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000331 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000181 mrcB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174357 mrcB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000150 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000161 mrcB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130032 mrcB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001580 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000165 mrcB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000333 mrcB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004177 mrcB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000165 mrcB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003188 mrcB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007714 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000103 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004623 mrcB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000123 mrcB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004125 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000807 mrcB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003504 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008496 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004239 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287779 mrcB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003953 mrcB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063608 mrcB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001902 mrcB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004134 mrcB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004075 mrcB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008221 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138770 mrcB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000999 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004405 mrcB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002951 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000213 mrcB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004484 mrcB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000661 mrcB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000642 mrcB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008317 mrcB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004588 mrcB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007098 mrcB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004548 mrcB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005034 mrcB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008646 mrcB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004580 mrcB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005851 mrcB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000198 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000197 mrcB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000246 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004879 mrcB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005917 mrcB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004312 mrcB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004456 mrcB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105724 mrcB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081909 mrcB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000227 mrcB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091220 mrcB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004297 mrcB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007099 mrcB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004500 mrcB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001730 mrcB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264188 mrcB CDS
Person Approved Go view Shigella boydii 227 ADV-0000148 mrcB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005538 mrcB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006029 mrcB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000180 mrcB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071080 mrcB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086503 mrcB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000138 mrcB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000174 mrcB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000659 VC0602 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000125 mrcB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001512 mrcB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002227 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002253 b0149 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000141 mrcB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000457 mrcB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000879 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234852 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005106 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003469 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008183 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004278 mrcB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126767 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006408 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005896 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003985 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005882 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004235 mrcB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030432 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006638 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000853 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003549 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004883 mrcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007349 mrcB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000780 mrcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000908 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004110 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002648 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000062 mrcB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 159730 to 172264
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000497gluQCDScomplement159186160112Upstream
ABE-0000499dksACDScomplement160149160604Upstream
ABE-0000503sfsACDScomplement160782161486Upstream
ABE-0000505thpRCDScomplement161501162031Upstream
ABE-0000510hrpBCDSforward162105164534Upstream
ABE-0000516mrcBCDSforward164730167264Matches
ABE-0285331repeat_regionforward167281167305Downstream
ABE-0000520fhuACDSforward167484169727Downstream
ABE-0000522fhuCCDSforward169778170575Downstream
ABE-0000524fhuDCDSforward170575171465Downstream
ABE-0000526fhuBCDSforward171462173444Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.