Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000520 (fhuA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000520 showshow history
Names
fhuA ECK0149 JW0146 tonA T5rec T1 b0150
Product
ferrichrome outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 167484 169727 2244 748
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Apr 2008
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Apr 2008
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR010105 (IPR010105 TonB-dependent siderophore receptor) Apr 2008
Automated Process Approved PF07715 (PF07715 TonB-dependent Receptor Plug Domain) Jul 2018
Automated Process Approved PF00593 (PF00593 TonB dependent receptor) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fhuA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym T5rec Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym tonA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0149 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0146 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym T1 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0150 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ferrichrome outer membrane transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name outer membrane pore protein, receptor for ferrichrome, colicin M, and phages T1, T5 and phi80 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00593 TonB dependent receptor Protein Sequence Similarity - PFAM Model Name: PF00593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010105 TonB-dependent siderophore receptor Protein Sequence Similarity - InterPro Domain: IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07715 TonB-dependent Receptor Plug Domain Protein Sequence Similarity - PFAM Model Name: PF07715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 8.1 (extrachromosomal; prophage genes and phage related functions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 8.4 (extrachromosomal; colicin related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.14 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The Outer Membrane Receptor (OMR) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.58 (transport; substrate; ferrichrome) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000520 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944856 Published Annotation - Entrez Gene Database ID: 944856
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06971 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786344 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P06971 Published Annotation - Swiss-Prot Accession Number: P06971 Jan 2005
Automated Process Approved db xref EcoGene:EG10302 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function membrane; Outer membrane constituents Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73261.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000067 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000072 fhuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001625 fhuA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001465 fhuA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000069 fhuA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000812 fhuA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003405 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001007 fhuA_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001417 fhuA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005955 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019156 fct CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002898 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001188 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002977 fhuA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000915 fhuA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008418 fhuA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000161 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006422 fhuA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000147 fhuA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004146 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009579 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007871 fhuA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006494 fhuA CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005456 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076249 fhuA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000155 fhuA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000203 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005802 fhuA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006881 fhuA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000162 fhuA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004605 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001340 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009402 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007909 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008592 fhuA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005000 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009560 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008728 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007725 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009811 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009884 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010011 fhuA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009526 fhuA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024067 fhuA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007904 fhuA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004836 fhuA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000460 CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004409 fhuA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000150 fhuA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000209 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000193 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000330 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000183 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000152 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000163 fhuA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130033 fhuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001582 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000167 fhuA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000336 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004174 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000166 fhuA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003189 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006139 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000104 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004624 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008497 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004240 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287780 fhuA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003954 fhuA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064304 foxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002284 foxA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003184 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009014 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001235 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004407 fhuA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002950 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000214 fhuA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004486 fhuA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000666 fhuA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000647 fhuA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008315 fhuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004590 fhuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007096 fhuA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004550 fhuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005036 fhuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008648 fhuA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004582 fhuA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005849 fhuA CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004421 fhuA pseudogene
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000249 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004881 fhuA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005915 fhuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004314 fhuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004458 fhuA CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0285037 fhuA pseudogene
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0285033 fhuA pseudogene
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000229 fhuA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091223 fhuA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004296 fhuA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007097 fhuA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004502 fhuA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001731 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264712 CDS
Person Approved Go view Shigella boydii 227 ADV-0000149 fhuA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005540 fhuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006030 fhuA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000181 fhuA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071081 fhuA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086504 fhuA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000139 fhuA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000175 fhuA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002013 foxA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001869 foxA_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22781mutantTn5 InsertionRequest the StrainABE-0000520fhuAfhuA::Tn5(KAN-2) at position 1882 in Plus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 162484 to 174727
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000510hrpBCDSforward162105164534Upstream
ABE-0000516mrcBCDSforward164730167264Upstream
ABE-0285331repeat_regionforward167281167305Upstream
ABE-0000520fhuACDSforward167484169727Matches
ABE-0000522fhuCCDSforward169778170575Downstream
ABE-0000524fhuDCDSforward170575171465Downstream
ABE-0000526fhuBCDSforward171462173444Downstream
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.