Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000522 (fhuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000522 showshow history
Names
fhuC JW0147 ECK0150 b0151
Product
ATP-binding component of iron-hydroxamate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 169778 170575 798 266
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000092
EnteroFam0000522: Trusted threshold=696.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fhuC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0147 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0150 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0151 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of iron-hydroxamate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli MG1655 		Mar 2006
Automated Process Approved alternate product name iron-hydroxamate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0000522: Trusted threshold=696.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000092
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.58 (transport; substrate; ferrichrome) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786345 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945250 Published Annotation - Entrez Gene Database ID: 945250
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P07821 Published Annotation - Swiss-Prot Accession Number: P07821 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07821 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000522 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of hydroxymate-dependent iron transport; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73262.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 3.70
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 6.29
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000092 fhuC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002099 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001687 fhuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001956 fhuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001881 fhuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001985 fhuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002177 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000979 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000813 fhuC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003404 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001008 fhuC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001418 fhuC_1 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015427 fhuC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001189 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298595 fhuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002976 fhuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000916 fhuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008419 fhuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000162 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006421 fhuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000148 fhuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004145 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009578 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007872 fhuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006493 FhuC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076250 fhuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000156 fhuC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000204 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005803 fhuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006880 fhuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000163 fhuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004606 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001339 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009403 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007910 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008593 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009475 fhuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005001 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009561 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008729 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007726 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009810 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009883 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010012 fhuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009527 fhuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024068 fhuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007903 fhuC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004837 fhuC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000461 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000191 fhuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000151 fhuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000208 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000192 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000329 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000184 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000153 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000164 fhuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130034 fhuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001583 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000168 fhuC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000337 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004173 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000167 fhuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003190 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007713 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000105 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004625 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004123 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000809 fhuC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003502 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008498 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004241 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287781 fhuC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003955 fhuC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063607 fhuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001901 fhuC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004133 fhuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004074 fhuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008220 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004408 fhuC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002949 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000215 fhuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004487 fhuC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000672 fhuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000653 fhuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008314 fhuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004591 fhuC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007095 fhuC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004551 fhuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005037 fhuC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008649 fhuC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004583 fhuC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005848 fhuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000200 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000199 fhuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000250 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004882 fhuC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005914 fhuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004315 fhuC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004459 fhuC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105731 fhuC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081911 fhuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000230 fhuC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091224 fhuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004295 fhuC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007096 fhuC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004503 fhuC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001732 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264588 CDS
Person Approved Go view Shigella boydii 227 ADV-0000150 fhuC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005541 fhuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006031 fhuC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000182 fhuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071082 fhuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086505 fhuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000140 fhuC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000176 fhuC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000217 VC0201 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002226 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002257 fhuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000140 fhuC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000458 fhuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000880 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234854 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005105 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003468 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008182 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003964 fhuC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126763 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006409 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005897 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003984 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005884 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004236 fhuC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030433 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006639 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000854 fhuC CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004882 fhuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007348 fhuC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000781 fhuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000909 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004109 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002657 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000060 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20022mutantTn5 InsertionRequest the StrainABE-0000522fhuCfhuC::Tn5KAN-2 at position 165 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 164778 to 175575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000516mrcBCDSforward164730167264Upstream
ABE-0285331repeat_regionforward167281167305Upstream
ABE-0000520fhuACDSforward167484169727Upstream
ABE-0000522fhuCCDSforward169778170575Matches
ABE-0000524fhuDCDSforward170575171465Overlaps Downstream
ABE-0000526fhuBCDSforward171462173444Downstream
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Downstream
ABE-0285818yadXCDSforward175048175095Downstream
ABE-0000533clcACDSforward175107176528Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.