Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000524 (fhuD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000524 showshow history
Names
fhuD JW0148 ECK0151 b0152
Product
periplasmic-binding component of an ABC superfamily iron-hydroxamate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 170575 171465 891 297
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000093
EnteroFam0000524: Trusted threshold=817.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008091 (IPR008091 (DEPRECATED) Ferrichrome-binding periplasmic protein) Apr 2008
Automated Process Approved IPR002491 (IPR002491 ABC transporter periplasmic binding domain) Apr 2008
Automated Process Approved PF01497 (PF01497 Periplasmic binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006827 (DEPRECATED) high-affinity iron ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fhuD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0151 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0148 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0152 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily iron-hydroxamate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name hydroxamate-dependent iron transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name hydroxamate-dependent iron uptake, cytoplasmic membrane component Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name iron-hydroxamate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0000524: Trusted threshold=817.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000093
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008091 (DEPRECATED) Ferrichrome-binding periplasmic protein Protein Sequence Similarity - InterPro Domain: IPR008091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01497 Periplasmic binding protein Protein Sequence Similarity - PFAM Model Name: PF01497
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002491 ABC transporter periplasmic binding domain Protein Sequence Similarity - InterPro Domain: IPR002491
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.58 (transport; substrate; ferrichrome) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07822 Published Annotation - Swiss-Prot Accession Number: P07822 Jan 2005
Automated Process Approved db xref GeneID:947510 Published Annotation - Entrez Gene Database ID: 947510
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786346 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07822 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000524 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10305 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note hydroxamate-dependent iron uptake, cytoplasmic membrane component; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73263.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006827 (DEPRECATED) high-affinity iron ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000093 fhuD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002098 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001689 fhuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001987 fhuD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001883 fhuD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001953 fhuD CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003403 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001009 fhuD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001419 fhuD CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015426 fhuD CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001190 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298599 fhuD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000917 fhuD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000699 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008420 fhuD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000163 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006420 fhuD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000149 fhuD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004144 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009576 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007873 fhuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006492 FhuD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076251 fhuD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000157 fhuD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000205 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005804 fhuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006879 fhuD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000164 fhuD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004607 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001338 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009404 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007911 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008594 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009476 fhuD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005002 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009562 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008730 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007727 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009809 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009882 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010013 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009528 fhuD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024069 fhuD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007902 fhuD_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004838 fhuD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000462 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000192 fhuD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000152 fhuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000207 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000191 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000328 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000185 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000154 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000165 fhuD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130035 fhuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001584 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000169 fhuD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000338 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000168 fhuD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003191 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007711 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000106 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004626 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004242 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063606 fhuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001900 fhuD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002040 fhuD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004073 fhuD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008218 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004409 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002948 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000216 fhuD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004488 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000676 fhuD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000657 fhuD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008313 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004592 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004552 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005038 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008650 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004584 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005847 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000201 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000200 fhuD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000251 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005913 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004316 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004460 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105735 fhuD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081912 fhuD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000231 fhuD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091225 fhuD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007095 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004504 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001733 CDS
Person Approved Go view Shigella boydii 227 ADV-0000151 fhuD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005542 fhuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006032 fhuD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000183 fhuD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071083 fhuD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086506 fhuD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000141 fhuD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000177 fhuD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002225 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002261 fhuD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000139 fhuD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000459 fhuD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000881 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234855 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005103 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003467 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008180 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003965 fhuD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126760 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006411 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005899 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003983 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005885 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004238 fhuD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030434 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006640 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000855 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003552 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004881 fhuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007347 fhuD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000782 fhuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000910 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004108 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002667 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000059 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20023mutantTn5 InsertionRequest the StrainABE-0000524fhuDfhuD::Tn5KAN-2 at position 617 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 165575 to 176465
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000516mrcBCDSforward164730167264Upstream
ABE-0285331repeat_regionforward167281167305Upstream
ABE-0000520fhuACDSforward167484169727Upstream
ABE-0000522fhuCCDSforward169778170575Overlaps Upstream
ABE-0000524fhuDCDSforward170575171465Matches
ABE-0000526fhuBCDSforward171462173444Overlaps Downstream
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Downstream
ABE-0285818yadXCDSforward175048175095Downstream
ABE-0000533clcACDSforward175107176528Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.