Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000526 (fhuB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000526 showshow history
Names
fhuB JW0149 ECK0152 b0153
Product
membrane component of an ABC superfamily iron-hydroxamate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 171462 173444 1983 661
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000094
EnteroFam0000526: Trusted threshold=1485.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001991 (IPR001991 Sodium:dicarboxylate symporter) Apr 2008
Automated Process Approved IPR000522 (IPR000522 ABC transporter, permease protein, BtuC-like) Apr 2008
Automated Process Approved IPR037294 (IPR037294 ABC transporter, BtuC-like) Jul 2018
Automated Process Approved PF01032 (PF01032 FecCD transport family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fhuB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0149 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0152 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0153 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily iron-hydroxamate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name membrane component of ABC superfamily iron-hydroxamate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0000526: Trusted threshold=1485.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000094
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000522 ABC transporter, permease protein, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037294 ABC transporter, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR037294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01032 FecCD transport family Protein Sequence Similarity - PFAM Model Name: PF01032
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001991 Sodium:dicarboxylate symporter Protein Sequence Similarity - InterPro Domain: IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.58 (transport; substrate; ferrichrome) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10303 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786347 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946890 Published Annotation - Entrez Gene Database ID: 946890
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06972 Published Annotation - Swiss-Prot Accession Number: P06972 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06972 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000526 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73264.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000094 fhuB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002097 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001440 fhuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001829 fhuB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001882 fhuB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001827 fhuB CDS
Ortholog
Person Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0004082 pseudogene
Person Uncurated Go view Brenneria sp. EniD312 AKG-0000977 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000815 fhuB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001010 fhuB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001420 fhuB CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015425 fhuB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001191 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298602 fhuB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002974 fhuB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000918 fhuB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000698 fhuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008421 fhuB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000164 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006419 fhuB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000150 fhuB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004143 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009574 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007874 fhuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006491 FhuB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076252 fhuB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000158 fhuB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000206 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005805 fhuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006878 fhuB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000165 fhuB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004608 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001337 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009405 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007912 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008595 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009477 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005003 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009563 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008731 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007728 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009808 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009881 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010014 fhuB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009529 fhuB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024070 fhuB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007901 fhuB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004839 fhuB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000193 fhuB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000153 fhuB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000190 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000327 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000186 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000155 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000166 fhuB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130036 fhuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001585 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000170 fhuB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000339 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000169 fhuB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003192 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007710 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000107 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004627 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000127 fhuB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004121 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000811 fhuB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003500 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008500 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004243 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287783 fhuB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003956 fhuB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063605 fhuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001899 fhuB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002039 fhuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004072 fhuB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008217 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004410 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002947 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000217 fhuB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004489 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000681 fhuB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000662 fhuB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008312 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004593 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004553 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005039 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008651 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004585 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005846 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000202 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000201 fhuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000252 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005912 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004317 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004461 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105738 fhuB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081913 fhuB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000232 fhuB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091228 fhuB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007094 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004505 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001734 CDS
Person Approved Go view Shigella boydii 227 ADV-0000152 fhuB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005543 fhuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006033 fhuB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000184 fhuB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071084 fhuB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086507 fhuB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000142 fhuB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000178 fhuB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000219 VC0203 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002224 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002264 fhuB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000138 fhuB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000460 fhuB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000882 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234856 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005102 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003466 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008179 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003966 fhuB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126737 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006412 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005900 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003982 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005886 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004239 fhuB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030435 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006641 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000856 fhuB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003553 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004880 fhuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007346 fhuB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000783 fhuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000911 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004107 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002671 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000058 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20024mutantTn5 InsertionRequest the StrainABE-0000526fhuBfhuB::Tn5KAN-2 at position 180 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 166462 to 178444
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000516mrcBCDSforward164730167264Upstream
ABE-0285331repeat_regionforward167281167305Upstream
ABE-0000520fhuACDSforward167484169727Upstream
ABE-0000522fhuCCDSforward169778170575Upstream
ABE-0000524fhuDCDSforward170575171465Overlaps Upstream
ABE-0000526fhuBCDSforward171462173444Matches
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Downstream
ABE-0285818yadXCDSforward175048175095Downstream
ABE-0000533clcACDSforward175107176528Downstream
ABE-0285802yadWCDSforward176552176617Downstream
ABE-0000538erpACDSforward176610176954Downstream
ABE-0285333repeat_regionforward176969176987Downstream
ABE-0000540yadSCDScomplement177001177624Downstream
ABE-0000542btuFCDScomplement177662178462Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.