Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000529 (hemL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000529 showshow history
Names
hemL JW0150 gsa? ECK0153 popC gsa b0154
Product
glutamate-1-semialdehyde aminotransferase (aminomutase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 173602 174882 1281 427
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000095
EnteroFam0000529: Trusted threshold=1240.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004639 (IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004639
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004639
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hemL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym gsa Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym popC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0150 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gsa? Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0153 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0154 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamate-1-semialdehyde aminotransferase (aminomutase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutamate-1-semialdehyde aminotransferase (aminomutase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000529: Trusted threshold=1240.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000095
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase Protein Sequence Similarity - InterPro Domain: IPR004639
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.4.3.8 Published Annotation - Swiss-Prot Accession Number: P23893 Feb 2006
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23893 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946892 Published Annotation - Entrez Gene Database ID: 946892
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23893 Published Annotation - Swiss-Prot Accession Number: P23893 Jan 2005
Automated Process Approved db xref ASAP:ABE-0000529 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786349 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC73265.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004639
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004639
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000095 hemL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000387 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000583 hemL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000710 hemL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001876 hemL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000778 hemL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002183 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000976 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003401 hemL CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001011 hemL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001421 hemL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005614 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015423 hemL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003196 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001192 hemL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298607 hemL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002973 hemL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000919 hemL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000697 hemL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008422 hemL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000165 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006418 hemL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000151 hemL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004142 hemL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009573 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007875 hemL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006490 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076253 hemL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000159 hemL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000207 hemL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005806 hemL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006877 hemL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000166 hemL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004609 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001336 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009406 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007913 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008596 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009478 hemL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005004 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009564 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008732 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007729 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009807 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009880 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010015 hemL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009530 hemL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024071 hemL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007900 hemL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004840 hemL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000464 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000194 hemL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000154 hemL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000205 hemL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000189 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000326 hemL CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000187 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000156 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000167 hemL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130037 hemL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001586 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000171 hemL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000340 hemL CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001648 hemL CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000170 hemL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003193 hemL CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007709 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000108 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004628 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000128 hemL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004120 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000812 hemL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003499 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008501 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004244 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287784 hemL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003957 hemL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063602 hemL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001911 hemL CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000850 hemL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004068 hemL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008213 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138813 hemL CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004876 hemL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004419 hemL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002946 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000227 hemL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004499 hemL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000713 hemL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000690 hemL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008301 hemL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004605 hemL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008638 hemL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004554 hemL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005050 hemL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008662 hemL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004596 hemL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005835 hemL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000211 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000209 hemL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000263 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004894 hemL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005901 hemL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004318 hemL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004462 hemL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105741 hemL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081914 hemL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000242 hemL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091249 hemL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004282 hemL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007085 hemL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004514 hemL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000182 hemL CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264866 hemL CDS
Person Approved Go view Shigella boydii 227 ADV-0000153 hemL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005544 hemL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006034 hemL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000185 hemL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071085 hemL CDS
Person Approved Go view Shigella flexneri 301 ABT-0086508 hemL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000143 hemL CDS
Person Approved Go view Shigella sonnei 046 ADD-0000179 hemL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000683 VC0626 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000190 hemL CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001510 hemL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002223 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002271 gsa CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000137 gsa CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000461 hemL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000883 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234878 hemL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005101 hemL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003465 hemL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008178 hemL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003967 hemL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126734 hemL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006413 hemL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005901 hemL CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003981 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005887 hemL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004240 hemL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030436 hemL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006642 hemL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000857 hemL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003554 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004879 hemL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007345 hemL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000784 hemL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000912 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004106 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002681 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000057 hemL CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 168602 to 179882
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000520fhuACDSforward167484169727Downstream
ABE-0000522fhuCCDSforward169778170575Downstream
ABE-0000524fhuDCDSforward170575171465Downstream
ABE-0000526fhuBCDSforward171462173444Downstream
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Matches
ABE-0285818yadXCDSforward175048175095Upstream
ABE-0000533clcACDSforward175107176528Upstream
ABE-0285802yadWCDSforward176552176617Upstream
ABE-0000538erpACDSforward176610176954Upstream
ABE-0285333repeat_regionforward176969176987Upstream
ABE-0000540yadSCDScomplement177001177624Upstream
ABE-0000542btuFCDScomplement177662178462Upstream
ABE-0000545mtnCDScomplement178455179153Upstream
ABE-0000548dgtCDSforward179237180754Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.