Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000545 (mtn) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000545 showshow history
Names
mtn mtnN yadA pfs JW0155 ECK0158 b0159
Product
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 178455 179153 699 233
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000098
EnteroFam0000545: Trusted threshold=615.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR010049 (IPR010049 MTA/SAH nucleosidase) Apr 2008
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Apr 2008
Automated Process Approved IPR035994 (IPR035994 Nucleoside phosphorylase superfamily) Jul 2018
Automated Process Approved PF01048 (PF01048 Phosphorylase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019509 L-methionine salvage from methylthioadenosine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009164 nucleoside catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008782 adenosylhomocysteine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008930 methylthioadenosine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mtn Published Annotation - Swiss-Prot Accession Number: P0AF12 Feb 2006
Person Approved synonym JW0155 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pfs Published Sequence Analysis - PubMed ID: 9524204 Jan 2006
Person Approved synonym mtnN Published Annotation - Swiss-Prot Accession Number: P0AF12
Reference: Escherichia coli K-12 MG1655
Jan 2007
Automated Process Approved synonym yadA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ECK0158 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0159 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Experimental - PubMed ID: 9524204 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000545: Trusted threshold=615.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000098
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF01048 Phosphorylase superfamily Protein Sequence Similarity - PFAM Model Name: PF01048
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR035994 Nucleoside phosphorylase superfamily Protein Sequence Similarity - InterPro Domain: IPR035994
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR010049 MTA/SAH nucleosidase Protein Sequence Similarity - InterPro Domain: IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 3.2.2.9 Published Annotation - Swiss-Prot Accession Number: P0AF12 Feb 2006
Person Approved MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11090 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786354 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AF12 Published Annotation - Swiss-Prot Accession Number: P0AF12 Jan 2006
Automated Process Approved db xref GeneID:948542 Published Annotation - Entrez Gene Database ID: 948542
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF12 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function cleaves 5'-methylthioadenosine into adenine and methylthioribose Published Journal Article - Complete Citation: Duerre, J.A. (1962) J. Biol. Chem. 237:3737-3741
Reference: Escherichia coli B
Feb 2006
Person Approved function cleaves S-adenosylhomocysteine into adenine and S-ribosyl homocysteine Published Journal Article - Complete Citation: Duerre, J.A. (1962) J. Biol. Chem. 237:3737-3741
Reference: Escherichia coli B
Feb 2006
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73270.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved regulation expression regulated by glucose; expression of a pfs promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110
Feb 2006
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019509 L-methionine salvage from methylthioadenosine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009164 nucleoside catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008930 methylthioadenosine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008782 adenosylhomocysteine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000098 mtn CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000384 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000437 mtn CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000555 mtn CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000911 mtn CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001303 mtn CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002186 mtnN CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000973 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129480 pfs CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104918 pfs CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104320 pfs CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000822 mtnN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003396 mtnN CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001016 mtnN CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001426 mtnN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005618 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015417 mtnN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003192 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001197 mtnN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298616 mtnN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002969 pfs CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000922 mtnN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000692 mtnN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008427 mtnN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000170 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006359 mtnN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000156 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004137 mtnN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009566 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007880 mtnN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006485 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076259 pfs CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000164 mtnN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000212 mtnN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005811 mtnN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006872 mtnN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000171 pfs CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004614 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001331 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009411 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007918 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008601 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009483 mtnN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005009 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009569 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008737 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007734 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009802 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009875 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010020 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009535 mtnN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024076 pfs CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007895 mtnN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004845 mtnN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000469 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000199 pfs CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000159 pfs CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000200 mtnN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000184 mtnN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000321 mtnN CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000193 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174372 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000161 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000172 mtnN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130042 pfs CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001591 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000176 mtn CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000345 mtnN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001656 mtnN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000175 pfs CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003198 mtnN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007705 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000112 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004632 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000131 mtnN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004116 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000816 mtnN CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003495 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008505 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004247 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287788 mtn CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003960 pfs CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063598 pfs CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001914 mtnN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000848 mtn CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004064 pfs CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008206 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138825 mtnA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004426 mtnN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002941 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000233 pfs CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004505 mtnN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000733 pfs CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000707 pfs CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008295 mtnN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004610 mtnN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008633 mtnN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004559 mtnN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005056 mtnN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008668 mtnN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004601 mtnN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005829 mtnN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000216 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000214 pfs CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000269 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004900 mtnN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005895 mtnN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004324 mtnN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004468 mtnN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105752 pfs CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081919 pfs CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000248 pfs CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091258 pfs CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004276 mtnN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007079 mtnN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004520 mtnN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000187 mtnN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264888 pfs CDS
Person Approved Go view Shigella boydii 227 ADV-0000158 pfs CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005549 mtnN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006039 mtnN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000190 pfs CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071090 pfs CDS
Person Approved Go view Shigella flexneri 301 ABT-0086513 pfs CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000148 pfs CDS
Person Approved Go view Shigella sonnei 046 ADD-0000184 pfs CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002472 VC2379 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000615 pfs CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001500 mtn CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002979 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002289 mtnN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000132 mtnN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000466 pfs CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000889 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234904 pfs CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005095 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003458 pfs CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008172 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003972 pfs CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126705 pfs CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006419 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005907 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005893 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004246 mtnN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030442 pfs CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006648 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000864 pfs CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003561 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004873 mtnN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007340 mtnN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000789 pfs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000919 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004100 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002708 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000052 mtnN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 173455 to 184153
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285332repeat_regionforward173504173588Downstream
ABE-0000529hemLCDScomplement173602174882Downstream
ABE-0285818yadXCDSforward175048175095Downstream
ABE-0000533clcACDSforward175107176528Downstream
ABE-0285802yadWCDSforward176552176617Downstream
ABE-0000538erpACDSforward176610176954Downstream
ABE-0285333repeat_regionforward176969176987Downstream
ABE-0000540yadSCDScomplement177001177624Downstream
ABE-0000542btuFCDScomplement177662178462Overlaps Downstream
ABE-0000545mtnCDScomplement178455179153Matches
ABE-0000548dgtCDSforward179237180754Upstream
ABE-0000551degPCDSforward180884182308Upstream
ABE-0000554cdaRCDSforward182463183620Upstream
ABE-0000556yaeHCDScomplement183709184095Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.