Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000548 (dgt) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000548 showshow history
Names
dgt JW0156 ECK0159 optA b0160
Product
deoxyguanosine triphosphate triphosphohydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 179237 180754 1518 506
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000099
EnteroFam0000548: Trusted threshold=1238.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003607 (IPR003607 HD/PDEase domain) Apr 2008
Automated Process Approved IPR006261 (IPR006261 dNTP triphosphohydrolase) Apr 2008
Automated Process Approved IPR006674 (IPR006674 HD domain) Apr 2008
Automated Process Approved IPR020779 (IPR020779 dNTP triphosphohydrolase, type 1) Jul 2018
Automated Process Approved PF01966 (PF01966 HD domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006203 dGTP catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0046039 GTP metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016793 triphosphoric monoester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008832 dGTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dgt Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym optA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0156 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0159 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0160 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product deoxyguanosine triphosphate triphosphohydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name deoxyguanosine triphosphate triphosphohydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000548: Trusted threshold=1238.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000099
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01966 HD domain Protein Sequence Similarity - PFAM Model Name: PF01966
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006674 HD domain Protein Sequence Similarity - InterPro Domain: IPR006674
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006261 dNTP triphosphohydrolase Protein Sequence Similarity - InterPro Domain: IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020779 dNTP triphosphohydrolase, type 1 Protein Sequence Similarity - InterPro Domain: IPR020779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003607 HD/PDEase domain Protein Sequence Similarity - InterPro Domain: IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.5.1 Published Annotation - Swiss-Prot Accession Number: P15723 Feb 2006
Automated Process Uncurated EC number 3.1.5.- Published Annotation - Database Name: EC2GO: GO:0016793
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000548 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10225 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P15723 Published Annotation - Swiss-Prot Accession Number: P15723 Jan 2005
Automated Process Approved db xref GI:1786355 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947177 Published Annotation - Entrez Gene Database ID: 947177
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15723 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Nucleotide hydrolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73271.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006203 dGTP catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0046039 GTP metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016793 triphosphoric monoester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008832 dGTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000099 dgt CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000383 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000905 dgt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001291 dgt CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000874 dgt CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001149 dgt CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000823 dgt CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003395 dgt CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001017 dgt CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001427 dgt CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005619 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015415 dgt CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003191 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001198 dgt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298618 dgt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002968 dgt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000923 dgt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000691 dgt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008428 dgt CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000171 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006358 dgt CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000157 dgt CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004136 dgt CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009565 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007881 dgt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006484 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076260 dgt CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000165 dgt CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000213 dgt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005812 dgt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006871 dgt CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000172 dgt CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004615 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001330 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009412 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007919 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008602 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009484 dgt CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005010 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009570 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008738 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007735 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009801 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009874 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010021 dgt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009536 dgt CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024077 dgt CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007894 dgt CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004846 dgt CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000470 dgt CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000200 dgt CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000160 dgt CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000199 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000183 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000320 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000194 dgt CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174373 dgt CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000162 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000173 dgt CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130043 dgt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001592 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000177 dgt CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000346 dgt CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000176 dgt CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003199 dgt CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007704 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000113 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004633 dgt CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004115 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000817 CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003494 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008506 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004248 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287789 dgt CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003961 dgt CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063597 dgt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001897 dgt CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002037 dgt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004063 dgt CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008205 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138828 dgt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004427 dgt CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002940 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000234 dgt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004506 dgt CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000735 dgt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000709 dgt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008294 dgt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004611 dgt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008632 dgt CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004560 dgt CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005057 dgt CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008669 dgt CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004602 dgt CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005828 dgt CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000217 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000215 dgt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000270 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004901 dgt CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005894 dgt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004325 dgt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004469 dgt CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105754 dgt CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081920 dgt CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000249 dgt CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091262 dgt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004275 dgt CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007078 dgt CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004521 dgt CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000188 dgt CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266072 CDS
Person Approved Go view Shigella boydii 227 ADV-0000159 dgt CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005550 dgt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006040 dgt CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071091 dgt CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0086514 dgt CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000149 dgt CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0000185 dgt pseudogene
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001497 dgt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002978 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002291 dgt CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000130 dgt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000467 dgt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000890 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234905 dgt CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005094 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003457 dgt CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008171 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003973 dgt CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126704 dgt CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006420 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005908 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002055 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005894 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004247 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030443 dgt CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006649 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000865 dgt CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003562 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004872 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007339 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000790 dgt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000920 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004099 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002710 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000051 dgt CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20028mutantTn5 InsertionRequest the StrainABE-0000548dgtdgt::Tn5KAN-2 at position 172 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 174237 to 185754
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000529hemLCDScomplement173602174882Upstream
ABE-0285818yadXCDSforward175048175095Upstream
ABE-0000533clcACDSforward175107176528Upstream
ABE-0285802yadWCDSforward176552176617Upstream
ABE-0000538erpACDSforward176610176954Upstream
ABE-0285333repeat_regionforward176969176987Upstream
ABE-0000540yadSCDScomplement177001177624Upstream
ABE-0000542btuFCDScomplement177662178462Upstream
ABE-0000545mtnCDScomplement178455179153Upstream
ABE-0000548dgtCDSforward179237180754Matches
ABE-0000551degPCDSforward180884182308Downstream
ABE-0000554cdaRCDSforward182463183620Downstream
ABE-0000556yaeHCDScomplement183709184095Downstream
ABE-0000559yaeICDScomplement184257185069Downstream
ABE-0000565dapDCDScomplement185123185947Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.