Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000582 (pyrH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000582 showshow history
Names
pyrH umk JW0166 ECK0170 smbA b0171
Product
uridylate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 191855 192580 726 242
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000106
EnteroFam0000582: Trusted threshold=717.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011817 (IPR011817 Uridylate kinase) Apr 2008
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR015963 (IPR015963 Uridylate kinase, bacteria) Jul 2018
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0033862 UMP kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009041 uridylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0170 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym umk Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0166 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym smbA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0171 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product uridylate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name uridylate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000582: Trusted threshold=717.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000106
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015963 Uridylate kinase, bacteria Protein Sequence Similarity - InterPro Domain: IPR015963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011817 Uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR011817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.4.22 Published Annotation - Database Name: EC2GO: GO:0033862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.4.- Published Annotation - Swiss-Prot Accession Number: P0A7E9 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000582 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7E9 Published Annotation - Swiss-Prot Accession Number: P0A7E9 Jan 2006
Automated Process Approved db xref EcoGene:EG11539 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786367 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7E9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944989 Published Annotation - Entrez Gene Database ID: 944989
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Central intermediary metabolism: Nucleotide interconversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73282.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0033862 UMP kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009041 uridylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000106 pyrH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000682 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000253 pyrH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000218 pyrH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000524 pyrH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000422 pyrH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000637 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001589 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129503 pyrH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104941 pyrH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104343 pyrH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000833 pyrH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003387 pyrH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001027 pyrH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001437 pyrH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008179 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015950 pyrH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000974 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001208 pyrH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298651 pyrH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002959 pyrH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000932 pyrH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000679 pyrH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008440 pyrH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000180 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006346 pyrH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000166 pyrH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004127 pyrH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009553 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007892 pyrH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006472 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076272 pyrH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000176 pyrH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000225 pyrH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005823 pyrH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006860 pyrH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000182 pyrH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004624 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001320 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009423 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007930 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008613 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009495 pyrH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005021 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009581 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008749 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007746 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009791 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009863 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010032 pyrH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009547 pyrH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024087 pyrH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007884 pyrH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004856 pyrH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000479 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000210 pyrH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000171 pyrH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000187 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000171 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000307 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000204 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174384 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000171 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000183 pyrH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130052 pyrH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001602 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000187 pyrH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002933 pyrH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004126 pyrH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000185 pyrH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003209 pyrH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007909 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000122 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004642 pyrH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000142 pyrH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004105 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000828 pyrH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003484 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008516 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004257 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287800 pyrH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003970 pyrH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061276 pyrH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000555 pyrH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001478 pyrH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001670 pyrH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005578 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138301 pyrH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001566 pyrH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004438 pyrH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002929 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000246 pyrH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004518 pyrH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000776 pyrH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000746 pyrH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008283 pyrH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004622 pyrH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008559 pyrH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004572 pyrH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005068 pyrH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008680 pyrH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004613 pyrH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005817 pyrH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000228 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000226 pyrH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000284 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004912 pyrH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008430 pyrH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004337 pyrH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004482 pyrH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105785 pyrH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081930 pyrH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000260 pyrH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091288 pyrH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004264 pyrH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009369 pyrH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004532 pyrH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001898 pyrH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265197 pyrH CDS
Person Approved Go view Shigella boydii 227 ADV-0000169 pyrH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005562 pyrH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006055 pyrH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000203 pyrH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071101 pyrH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086522 pyrH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000158 pyrH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000197 pyrH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002351 VC2258 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007174 pyrH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002069 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009505 pyrH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003454 pyrH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002442 pyrH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000516 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241084 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007554 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000639 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005097 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002314 pyrH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118692 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008409 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007345 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003390 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009255 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006409 pyrH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032893 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005604 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003556 pyrH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001996 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006061 pyrH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004968 pyrH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003103 pyrH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003731 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001248 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002752 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000043 pyrH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 186855 to 197580
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000568glnDCDScomplement185978188650Upstream
ABE-0000571mapCDScomplement188712189506Upstream
ABE-0047239tffncRNAforward189712189847Upstream
ABE-0000575rpsBCDSforward189874190599Upstream
ABE-0000579tsfCDSforward190857191708Upstream
ABE-0000582pyrHCDSforward191855192580Matches
ABE-0000588frrCDSforward192872193429Downstream
ABE-0000592dxrCDSforward193521194717Downstream
ABE-0285836ispZncRNAforward194784194844Downstream
ABE-0000595ispUCDSforward194903195664Downstream
ABE-0000600cdsACDSforward195677196534Downstream
ABE-0000603rsePCDSforward196546197898Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.