Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000600 (cdsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000600 showshow history
Names
cdsA JW5810 ECK0174 b0175
Product
CDP-diglyceride synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 195677 196534 858 286
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000110
EnteroFam0000600: Trusted threshold=594.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000374 (IPR000374 Phosphatidate cytidylyltransferase) Apr 2008
Automated Process Approved PF01148 (PF01148 Cytidylyltransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004605 phosphatidate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cdsA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0174 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5810 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0175 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product CDP-diglyceride synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name CDP-diglyceride synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000600: Trusted threshold=594.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000110
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01148 Cytidylyltransferase family Protein Sequence Similarity - PFAM Model Name: PF01148
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000374 Phosphatidate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.41 Published Annotation - Swiss-Prot Accession Number: P0ABG1 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081696 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944876 Published Annotation - Entrez Gene Database ID: 944876
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABG1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10139 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABG1 Published Annotation - Swiss-Prot Accession Number: P0ABG1 Jan 2006
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note CDP-diglyceride synthetase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73286.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004605 phosphatidate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000110 cdsA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000686 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000699 cdsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000527 cdsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000375 cdsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000775 cdsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000633 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001593 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000837 cdsA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003383 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001031 cdsA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001441 cdsA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008173 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046546 cdsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000978 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001212 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298662 cdsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002955 cdsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000936 cdsA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000675 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008444 cdsA1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000184 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006342 cdsA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000170 cdsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004123 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009548 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007896 cdsA1 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006468 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076277 cdsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000180 cdsA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000230 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005827 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006854 cdsA1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000186 cdsA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004628 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001315 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009427 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007934 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008617 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009499 cdsA1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005025 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009585 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008754 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007750 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009787 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010852 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009551 cdsA1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024091 cdsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007880 cdsA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004860 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000483 cdsA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000214 cdsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000175 cdsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000183 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000167 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000303 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000208 cdsA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174388 cdsA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000175 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000187 cdsA1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130056 cdsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001606 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000191 cdsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002929 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004122 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000189 cdsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003213 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007902 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000126 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004646 cdsA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000146 cdsA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004101 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000832 cdsA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003480 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008520 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004261 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287804 cdsA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003974 cdsA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061280 cdsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000556 cdsA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001481 cdsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001674 cdsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005583 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138313 cdsA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001569 cdsA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004442 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002924 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000250 cdsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004522 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000788 cdsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000758 cdsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008279 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004626 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008563 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004576 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005072 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008684 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004617 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005813 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000232 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000230 cdsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000289 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004916 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008426 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004341 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004486 cdsA1 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105794 cdsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081934 cdsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000265 cdsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091300 cdsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004260 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009373 cdsA1 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004536 cdsA1 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001902 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265200 cdsA CDS
Person Approved Go view Shigella boydii 227 ADV-0000173 cdsA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005566 cdsA1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008561 cdsA1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000207 cdsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071106 cdsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086526 cdsA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000162 cdsA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000201 cdsA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002348 VC2255 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000563 cdsA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007165 cdsA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002073 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009493 cds CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003458 cdsA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002438 cdsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000512 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241071 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007550 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000643 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005101 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002310 cdsA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118700 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008405 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007341 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003386 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009259 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006405 cdsA1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032888 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005600 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003551 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001991 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006057 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004972 cdsA1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003099 cdsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003726 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001252 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002775 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000039 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 190677 to 201534
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000579tsfCDSforward190857191708Upstream
ABE-0000582pyrHCDSforward191855192580Upstream
ABE-0000588frrCDSforward192872193429Upstream
ABE-0000592dxrCDSforward193521194717Upstream
ABE-0285836ispZncRNAforward194784194844Upstream
ABE-0000595ispUCDSforward194903195664Upstream
ABE-0000600cdsACDSforward195677196534Matches
ABE-0000603rsePCDSforward196546197898Downstream
ABE-0000605bamACDSforward197928200360Downstream
ABE-0000608skpCDSforward200482200967Downstream
ABE-0000610lpxDCDSforward200971201996Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.