Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000610 (lpxD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000610 showshow history
Names
lpxD ssc ECK0178 JW0174 skp omsA fir firA hlpA b0179
Product
UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 200971 201996 1026 342
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000114
EnteroFam0000610: Trusted threshold=952.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007691 (IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD) Apr 2008
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Apr 2008
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Apr 2008
Automated Process Approved IPR020573 (IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region) Jul 2018
Automated Process Approved PF04613 (PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD) Jul 2018
Automated Process Approved PF14602 (PF14602 Hexapeptide repeat of succinyl-transferase) Jul 2018
Automated Process Approved PF00132 (PF00132 Bacterial transferase hexapeptide (six repeats)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016410 N-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007691
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lpxD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym hlpA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym fir Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym omsA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ssc Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0174 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0178 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym skp Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym firA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0179 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase Published Annotation - Swiss-Prot Accession Number: P21645 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000610: Trusted threshold=952.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000114
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00132 Bacterial transferase hexapeptide (six repeats) Protein Sequence Similarity - PFAM Model Name: PF00132
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Protein Sequence Similarity - PFAM Model Name: PF04613
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14602 Hexapeptide repeat of succinyl-transferase Protein Sequence Similarity - PFAM Model Name: PF14602
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD Protein Sequence Similarity - InterPro Domain: IPR007691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region Protein Sequence Similarity - InterPro Domain: IPR020573
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.- Published Annotation - Swiss-Prot Accession Number: P21645 Feb 2006
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10316 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21645 Published Annotation - Swiss-Prot Accession Number: P21645 Jan 2005
Automated Process Approved db xref GeneID:944882 Published Annotation - Entrez Gene Database ID: 944882
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000610 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Surface polysaccharides & antigens Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of yciL ASAP:4259:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of pssA ASAP:8510:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of cbpA ASAP:3379:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73290.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016410 N-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007691
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000114 lpxD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000690 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001079 lpxD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000721 lpxD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000492 lpxD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000809 lpxD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000629 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001597 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000841 lpxD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003379 lpxD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001035 lpxD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001445 lpxD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008167 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017466 lpxD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000982 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001216 lpxD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298683 lpxD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002951 lpxD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000940 lpxD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000671 lpxD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009284 lpxD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000188 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006338 lpxD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000174 lpxD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004119 lpxD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009542 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007900 lpxD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007285 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076281 lpxD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000184 lpxD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000234 lpxD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005831 lpxD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006850 lpxD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000190 lpxD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004632 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002477 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009432 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007938 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008621 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010278 lpxD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005029 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008758 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007754 lpxD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009555 lpxD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024095 lpxD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007876 lpxD_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004864 lpxD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000487 lpxD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000218 lpxD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000179 lpxD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000179 lpxD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000163 lpxD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000299 lpxD CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000212 lpxD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174392 lpxD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000179 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000191 lpxD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130060 lpxD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001610 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000195 lpxD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002925 lpxD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004118 lpxD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000193 lpxD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003217 lpxD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007896 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000130 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004650 lpxD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000150 lpxD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004097 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000836 lpxD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003476 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008524 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004265 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287808 lpxD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003978 lpxD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061284 lpxD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000563 lpxD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003589 lpxD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001678 lpxD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005590 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138322 lpxD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001574 lpxD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004446 lpxD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002919 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000254 lpxD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004526 lpxD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000809 lpxD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000779 lpxD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004630 lpxD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008567 lpxD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004580 lpxD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005076 lpxD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008688 lpxD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004621 lpxD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005809 lpxD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000236 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000234 lpxD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000293 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004920 lpxD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008422 lpxD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004345 lpxD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004490 lpxD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105803 lpxD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081938 lpxD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000269 lpxD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091310 lpxD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004256 lpxD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004540 lpxD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001906 lpxD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265205 lpxD CDS
Person Approved Go view Shigella boydii 227 ADV-0000177 lpxD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005570 lpxD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000211 lpxD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071110 lpxD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086530 lpxD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000166 lpxD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000205 lpxD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002343 VC2250 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000558 lpxD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007160 lpxD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002077 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009469 firA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003462 lpxD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002434 lpxD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000508 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241061 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007546 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000650 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005105 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002306 lpxD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118720 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008401 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007337 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001157 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009263 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006401 lpxD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032884 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005596 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003545 lpxD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001985 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006053 lpxD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004976 lpxD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003095 lpxD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003720 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001259 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002799 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000035 lpxD CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0000610 lpxD lambda repressor assay Doodle - bnumber: b0179 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 195971 to 206996
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000600cdsACDSforward195677196534Upstream
ABE-0000603rsePCDSforward196546197898Upstream
ABE-0000605bamACDSforward197928200360Upstream
ABE-0000608skpCDSforward200482200967Upstream
ABE-0000610lpxDCDSforward200971201996Matches
ABE-0000613fabZCDSforward202101202556Downstream
ABE-0000618lpxACDSforward202560203348Downstream
ABE-0000620lpxBCDSforward203348204496Downstream
ABE-0000622rnhBCDSforward204493205089Downstream
ABE-0000624dnaECDSforward205126208608Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.