Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000613 (fabZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000613 showshow history
Names
fabZ yaeA sfhC sabA JW0175 ECK0179 sefA b0180
Product
(3R)-hydroxymyristol acyl carrier protein dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 202101 202556 456 152
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000115
EnteroFam0000613: Trusted threshold=435.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010084 (IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ) Apr 2008
Automated Process Approved IPR013114 (IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ) Apr 2008
Automated Process Approved IPR029069 (IPR029069 HotDog domain superfamily) Jul 2018
Automated Process Approved PF07977 (PF07977 FabA-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fabZ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0179 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0175 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sabA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yaeA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym sefA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym sfhC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0180 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product (3R)-hydroxymyristol acyl carrier protein dehydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000613: Trusted threshold=435.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000115
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Protein Sequence Similarity - InterPro Domain: IPR013114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07977 FabA-like domain Protein Sequence Similarity - PFAM Model Name: PF07977
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029069 HotDog domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Protein Sequence Similarity - InterPro Domain: IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.- Published Annotation - Swiss-Prot Accession Number: P0A6Q6 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11284 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944888 Published Annotation - Entrez Gene Database ID: 944888
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A6Q6 Published Annotation - Swiss-Prot Accession Number: P0A6Q6 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6Q6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000613 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786377 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved molecular interaction Interacts with the product of rpsA ASAP:3104:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rplI ASAP:13746:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rplV ASAP:10850:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rplM ASAP:10599:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rpsG ASAP:10917:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rpsB ASAP:575:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of rpsC ASAP:10848:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73291.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010084
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000115 fabZ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000691 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000507 fabZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000462 fabZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000475 fabZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000513 fabZ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000628 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001598 CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104945 fabZ CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104348 fabZ CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000842 fabZ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003378 fabZ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001036 fabZ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001446 fabZ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008166 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017468 fabZ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000983 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001217 fabZ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298696 fabZ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002949 fabZ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000941 fabZ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000670 fabZ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009285 fabZ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000189 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006337 fabZ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000175 fabZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004118 fabZ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009541 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007901 fabZ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007284 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076282 fabZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000185 fabZ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000235 fabZ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005832 fabZ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006849 fabZ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000191 fabZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004633 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002478 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009433 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007939 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008622 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010279 fabZ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005030 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010286 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008759 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009363 fabZ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009556 fabZ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024096 fabZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007875 fabZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004865 fabZ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000488 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000219 fabZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000180 fabZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000178 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000162 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000298 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000213 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174393 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000180 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000192 fabZ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130061 fabZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001611 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000196 fabZ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002924 fabZ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004117 fabZ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000194 fabZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003218 fabZ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007895 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000131 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004651 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000151 fabZ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004096 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000837 fabZ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003475 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008525 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004266 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287809 fabZ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003979 fabZ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061285 fabZ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000564 fabZ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001484 fabZ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001679 fabZ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005591 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138325 fabZ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001575 fabZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004447 fabZ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002918 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000255 fabZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004527 fabZ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000822 fabZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000792 fabZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008940 fabZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004631 fabZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008568 fabZ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004581 fabZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005077 fabZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008689 fabZ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004622 fabZ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005808 fabZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000237 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000235 fabZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000295 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004921 fabZ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008421 fabZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004346 fabZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004491 fabZ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105815 fabZ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081939 fabZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000270 fabZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091313 fabZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004255 fabZ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009230 fabZ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004541 fabZ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001907 fabZ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265206 fabZ CDS
Person Approved Go view Shigella boydii 227 ADV-0000178 fabZ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005571 fabZ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007959 fabZ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000212 fabZ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071111 fabZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0086531 fabZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000167 fabZ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000206 fabZ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002342 VC2249 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000557 fabZ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007158 fabZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002078 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009467 fabZ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003463 fabZ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002433 fabZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000507 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241057 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007545 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000651 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005106 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002305 fabZ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118732 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008400 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007336 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001156 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009264 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006400 fabZ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032883 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005595 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003544 fabZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001984 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006052 fabZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004977 fabZ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003094 fabZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003719 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001260 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002807 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000033 fabZ CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0000613 fabZ lambda repressor assay Doodle - bnumber: b0180 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 197101 to 207556
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000603rsePCDSforward196546197898Upstream
ABE-0000605bamACDSforward197928200360Upstream
ABE-0000608skpCDSforward200482200967Upstream
ABE-0000610lpxDCDSforward200971201996Upstream
ABE-0000613fabZCDSforward202101202556Matches
ABE-0000618lpxACDSforward202560203348Downstream
ABE-0000620lpxBCDSforward203348204496Downstream
ABE-0000622rnhBCDSforward204493205089Downstream
ABE-0000624dnaECDSforward205126208608Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.